Motif J5_35246.3 Version J5_35246.3 of this group appears in releases 3.87 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13	break		14		15	break		16		17		18	break		19		20		21	1-5	1-21	2-3	3-12	4-10	4-12	5-11	5-21	6-9	7-8	13-14	15-16	17-20	18-19
1	J5_5TBW_001	5TBW	0.2355	1	4+1	5.8S rRNA	C	35	G	36	A	37	G	39	A	40	A	41	G	42	*	U	102	G	103	A	104	A	105	C	106	G	107	*	C	115	G	116	*	C	137	A	138	U	139	*	A	20	G	21	G	22	ncsS	cWW			tSH	tWW	tHH		tHS	cWW	cWW	cWW	cWW	cWW
2	J5_4WF9_001	4WF9	0.1026	1	X	LSU rRNA	C	47	A	48	A	49	G	51	A	52	A	53	G	54	*	C	115	G	116	A	117	A	118	U	119	G	120	*	C	129	A	130	*	U	149	A	150	U	151	*	A	178	A	179	G	180	ncsS	cWW			tSH		ntHH	tSs	tHS	cWW	cWW	cWW	ncWw	ncWW
3	J5_5J7L_013	5J7L	0.0000	1	DA	LSU rRNA	C	47	G	48	A	49	G	51	A	52	A	53	G	54	*	C	116	G	117	A	118	A	119	U	120	G	121	*	C	130	A	131	*	U	148	A	149	U	150	*	A	176	G	177	G	178	ncsS	cWW	ncSs	cHW	tSH		tHH		tHS	cWW	cWW	cWW		cWW
4	J5_8VTW_001	8VTW	0.0740	1	1A	LSU rRNA	C	47	G	48	A	49	G	51	A	52	A	53	G	54	*	C	116	G	117	A	118	A	119	U	120	G	121	*	C	130	G	131	*	C	148	A	149	C	150	*	G	176	G	177	G	178	ncsS	cWW	ncSs	cHW	tSH		tHH		tHS	cWW	cWW	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AGGCGAUGAAGUGAACGCGCAU	1
CAAUGAAGCGAAUGCAUAUAAG	1
CGAUGAAGCGAAUGCAUAUAGG	1
CGAUGAAGCGAAUGCGCACGGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAUGAAGAAUAG	2
GGAUGAAGAAC**A	1
AAUGAAGAAUAA	1

Release history

Release	3.87	3.88	3.89	3.90
Date	2024-08-14	2024-09-11	2024-10-09	2024-11-06
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-F-F-F-cWW-tSH-tHH-F-tHS-cWW-cWW-cWW-F
Heat map statistics: Min 0.07 | Avg 0.13 | Max 0.24

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Coloring options: Nucleotide numbers

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