Motif J5_35610.1 Version J5_35610.1 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | break | 23 | 24 | 25 | 26 | 27 | 28 | 29 | break | 30 | 31 | 32 | 33 | 34 | 1-34 | 5-12 | 6-18 | 7-11 | 7-16 | 8-9 | 10-12 | 11-16 | 13-19 | 14-15 | 20-21 | 20-33 | 22-23 | 28-32 | 29-30 | ||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_7RQB_006 | 7RQB | 0.0000 | 3 | 1A | LSU rRNA | A | 2057 | A | 2058 | A | 2059 | A | 2060 | G | 2061 | A | 2062 | C | 2063 | C | 2064 | * | G | 2446 | G | 2447 | A | 2450 | A | 2451 | C | 2452 | A | 2453 | * | U | 2500 | C | 2501 | G | 2502 | 2MA | 2503 | U | 2504 | G | 2505 | U | 2506 | C | 2507 | * | G | 2582 | G | 2583 | U | 2584 | U | 2585 | C | 2586 | A | 2587 | G | 2588 | * | C | 2606 | G | 2607 | G | 2608 | C | 2610 | U | 2611 | cWW | ncWW | tHH | cWW | ntWS | cWW | ntHH | tHW | cWW | cWW | ncSH | tWW | cWW | tHS | cWW |
| 2 | J5_7A0S_006 | 7A0S | 0.1156 | 3 | X | LSU rRNA | A | 2040 | A | 2041 | A | 2042 | A | 2043 | G | 2044 | A | 2045 | C | 2046 | C | 2047 | * | G | 2425 | G | 2426 | A | 2429 | A | 2430 | C | 2431 | A | 2432 | * | U | 2479 | C | 2480 | G | 2481 | A | 2482 | U | 2483 | G | 2484 | U | 2485 | C | 2486 | * | G | 2561 | G | 2562 | U | 2563 | U | 2564 | C | 2565 | A | 2566 | G | 2567 | * | C | 2585 | G | 2586 | G | 2587 | C | 2589 | U | 2590 | cWW | ncWW | cWW | ntWS | cWW | ntHH | tHW | cWW | cWW | ntWW | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU | 1 |
| AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAGAC*GAUAAC*CG(2MA)UGU*GUUCA*GGUC | 1 |
| AAAGAC*GAUAAC*CGAUGU*GUUCA*GGUC | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-tWW-F-tHS-F-F-F-cWW-F-cWW-cWW-F-F-F-F-tHW-F-F-cWW-cWW-cWW-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.06 | Max 0.12
Coloring options: