Motif J5_35610.1 Version J5_35610.1 of this group appears in releases 3.54 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	break		9		10		11		12		13		14	break		15		16		17		18		19		20		21		22	break		23		24		25		26		27		28		29	break		30		31		32		33		34	1-34	5-12	6-18	7-11	7-16	8-9	10-12	11-16	13-19	14-15	20-21	20-33	22-23	28-32	29-30
1	J5_7RQB_006	7RQB	0.0000	3	1A	LSU rRNA	A	2057	A	2058	A	2059	A	2060	G	2061	A	2062	C	2063	C	2064	*	G	2446	G	2447	A	2450	A	2451	C	2452	A	2453	*	U	2500	C	2501	G	2502	2MA	2503	U	2504	G	2505	U	2506	C	2507	*	G	2582	G	2583	U	2584	U	2585	C	2586	A	2587	G	2588	*	C	2606	G	2607	G	2608	C	2610	U	2611	cWW	ncWW	tHH	cWW	ntWS	cWW	ntHH	tHW	cWW	cWW	ncSH	tWW	cWW	tHS	cWW
2	J5_7A0S_006	7A0S	0.1156	3	X	LSU rRNA	A	2040	A	2041	A	2042	A	2043	G	2044	A	2045	C	2046	C	2047	*	G	2425	G	2426	A	2429	A	2430	C	2431	A	2432	*	U	2479	C	2480	G	2481	A	2482	U	2483	G	2484	U	2485	C	2486	*	G	2561	G	2562	U	2563	U	2564	C	2565	A	2566	G	2567	*	C	2585	G	2586	G	2587	C	2589	U	2590	cWW	ncWW		cWW	ntWS	cWW	ntHH	tHW	cWW	cWW		ntWW	cWW	ntHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AAAAGACCGGAUAACAUCG(2MA)UGUCGGUUCAGCGGUCU	1
AAAAGACCGGAUAACAUCGAUGUCGGUUCAGCGGUCU	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAAGACGAUAACCG(2MA)UGUGUUCAGGUC	1
AAAGACGAUAACCGAUGUGUUCAGGUC	1

Release history

Release	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-09-14	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08	2023-12-06	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (2)
Basepair signature: cWW-F-tWW-F-tHS-F-F-F-cWW-F-cWW-cWW-F-F-F-F-tHW-F-F-cWW-cWW-cWW-F-F-F
Heat map statistics: Min 0.12 | Avg 0.06 | Max 0.12

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