Motif J5_41473.1 Version J5_41473.1 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13	break		14		15		16		17		18		19		20		21	break		22		23		24		25		26		27		28	break		29		30		31		32		33	1-33	5-11	6-10	6-15	7-8	9-11	10-15	12-18	13-14	19-32	21-22	27-31	28-29
1	J5_7A0S_006	7A0S	0.0000	4	X	LSU rRNA	A	2040	A	2041	A	2042	A	2043	G	2044	C	2046	C	2047	*	G	2425	G	2426	A	2429	A	2430	C	2431	A	2432	*	U	2479	C	2480	G	2481	A	2482	U	2483	G	2484	U	2485	C	2486	*	G	2561	G	2562	U	2563	U	2564	C	2565	A	2566	G	2567	*	C	2585	G	2586	G	2587	C	2589	U	2590	cWW	ncWW	cWW	ntWS	cWW	ntHH	tHW	cWW	cWW	ntWW	cWW	ntHS	cWW
2	J5_4Y4O_016	4Y4O	0.1441	4	2A	LSU rRNA	A	2057	A	2058	A	2059	A	2060	G	2061	C	2063	C	2064	*	G	2446	G	2447	A	2450	A	2451	C	2452	A	2453	*	U	2500	C	2501	G	2502	2MA	2503	U	2504	G	2505	U	2506	C	2507	*	G	2582	G	2583	U	2584	U	2585	C	2586	A	2587	G	2588	*	C	2606	G	2607	G	2608	C	2610	U	2611	cWW	ncWW	cWW	ntWS	cWW	tHH	tHW	cWW	cWW	tWW	cWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AAAAGACCGGAUAACAUCGAUGUCGGUUCAGCGGUCU	1
AAAAGACCGGAUAACAUCG(2MA)UGUCGGUUCAGCGGUCU	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAAGACGAUAACCGAUGUGUUCAGGUC	1
AAAGACGAUAACCG(2MA)UGUGUUCAGGUC	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (2)
Basepair signature: cWW-F-tWW-F-tHS-F-F-F-cWW-cWW-cWW-F-tHH-F-tHW-F-F-cWW-cWW-cWW-F-F-F
Heat map statistics: Min 0.14 | Avg 0.07 | Max 0.14

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