J5_9AXU_003
3D structure
- PDB id
- 9AXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-translating S. pombe ribosome large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.94 Å
Loop
- Sequence
- CGAG*CGAAA*UGAAUGCAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 9AXU|1|2|C|746, 9AXU|1|2|A|816, 9AXU|1|2|G|817
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9AXU|1|2|C|700
9AXU|1|2|G|701
9AXU|1|2|A|702
9AXU|1|2|G|703
*
9AXU|1|2|C|729
9AXU|1|2|G|730
9AXU|1|2|A|731
9AXU|1|2|A|732
9AXU|1|2|A|733
*
9AXU|1|2|U|740
9AXU|1|2|G|741
9AXU|1|2|A|742
9AXU|1|2|A|743
9AXU|1|2|U|744
9AXU|1|2|G|745
9AXU|1|2|C|746
9AXU|1|2|A|747
9AXU|1|2|G|748
*
9AXU|1|2|C|777
9AXU|1|2|G|778
9AXU|1|2|A|779
*
9AXU|1|2|U|814
9AXU|1|2|A|815
9AXU|1|2|A|816
9AXU|1|2|G|817
9AXU|1|2|A|818
9AXU|1|2|G|819
Current chains
- Chain 2
- 28S ribosomal RNA
Nearby chains
- Chain P
- Large ribosomal subunit protein uL4A
- Chain X
- Large ribosomal subunit protein eL13
- Chain c
- Large ribosomal subunit protein eL18B
- Chain m
- Large ribosomal subunit protein uL15B
- Chain n
- Large ribosomal subunit protein eL29
- Chain u
- Large ribosomal subunit protein eL36B
Coloring options: