Motif J5_74302.3 Version J5_74302.3 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | break | 15 | 16 | break | 17 | 18 | 19 | 20 | 21 | 22 | 1-22 | 2-21 | 3-10 | 3-11 | 3-18 | 4-12 | 5-9 | 6-7 | 10-11 | 14-15 | 16-17 | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_7A0S_004 | 7A0S | 0.0854 | 1 | X | LSU rRNA | C | 593 | G | 594 | A | 595 | C | 596 | U | 597 | U | 598 | * | A | 681 | G | 682 | A | 683 | C | 684 | * | G | 822 | U | 823 | U | 824 | C | 825 | * | G | 1209 | C | 1210 | * | G | 1263 | C | 1264 | G | 1265 | G | 1266 | A | 1267 | G | 1269 | cWW | tSH | tSs | tHW | cHS | tWS | cWW | cWW | cWW | cWW | |
| 2 | J5_7RQB_004 | 7RQB | 0.0697 | 1 | 1A | LSU rRNA | C | 584 | G | 585 | A | 586 | C | 587 | U | 588 | C | 589 | * | G | 668 | G | 669 | A | 670 | C | 671 | * | G | 809 | U | 810 | U | 811 | C | 812 | * | G | 1195 | C | 1196 | * | G | 1250 | C | 1251 | G | 1252 | A | 1253 | A | 1254 | G | 1256 | cWW | tSH | tSs | tHW | cHS | tWS | cWW | cWW | cWW | cWW | |
| 3 | J5_5J7L_015 | 5J7L | 0.0000 | 1 | DA | LSU rRNA | C | 584 | G | 585 | A | 586 | C | 587 | U | 588 | U | 589 | * | A | 668 | G | 669 | A | 670 | C | 671 | * | G | 809 | U | 810 | U | 811 | C | 812 | * | G | 1195 | C | 1196 | * | G | 1250 | C | 1251 | G | 1252 | A | 1253 | A | 1254 | G | 1256 | cWW | tSH | ncSs | tSs | tHW | cHS | tWS | cWW | cWW | cWW | cWW |
| 4 | J5_4WF9_004 | 4WF9 | 0.1071 | 1 | X | LSU rRNA | C | 627 | G | 628 | A | 629 | G | 630 | U | 631 | U | 632 | * | A | 713 | G | 714 | A | 715 | C | 716 | * | G | 854 | U | 855 | U | 856 | C | 857 | * | G | 1234 | C | 1235 | * | G | 1288 | A | 1289 | G | 1290 | A | 1291 | A | 1292 | G | 1294 | cWW | tSH | tSs | ncWS | tWS | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACUU*AGAC*GUUC*GC*GCGGAUG | 1 |
| CGACUC*GGAC*GUUC*GC*GCGAAUG | 1 |
| CGACUU*AGAC*GUUC*GC*GCGAAUG | 1 |
| CGAGUU*AGAC*GUUC*GC*GAGAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACU*GA*UU**CGAAU | 2 |
| GACU*GA*UU**CGGAU | 1 |
| GAGU*GA*UU**AGAAU | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Heat map statistics
- Min 0.07 | Avg 0.07 | Max 0.13
Coloring options: