Motif J6_64525.1 Version J6_64525.1 of this group appears in releases 3.91 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | break | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 1-35 | 2-3 | 3-4 | 3-34 | 4-34 | 5-35 | 7-8 | 9-10 | 11-30 | 13-14 | 19-31 | 20-27 | 21-25 | 23-24 | |||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J6_9DFE_002 | 9DFE | 0.0000 | 6 | 1A | LSU rRNA | U | 2074 | U | 2075 | A | 2077 | * | U | 2243 | U | 2244 | U | 2245 | G | 2246 | * | C | 2258 | G | 2259 | * | C | 2281 | G | 2282 | C | 2283 | C | 2284 | * | G | 2384 | C | 2385 | C | 2386 | U | 2387 | G | 2389 | G | 2391 | A | 2392 | A | 2393 | C | 2394 | C | 2395 | * | G | 2421 | A | 2422 | U | 2423 | C | 2424 | A | 2425 | A | 2426 | C | 2427 | G | 2429 | A | 2432 | A | 2433 | A | 2434 | A | 2435 | cWW | cWH | cWW | ncsS | ntsS | cWH | cWW | cWW | cWW | cWW | tSS | tHW | tHW | cWW |
| 2 | J6_7A0S_002 | 7A0S | 0.1244 | 6 | X | LSU rRNA | U | 2057 | U | 2058 | A | 2060 | * | U | 2222 | U | 2223 | U | 2224 | G | 2225 | * | C | 2237 | G | 2238 | * | C | 2260 | G | 2261 | C | 2262 | C | 2263 | * | G | 2363 | C | 2364 | U | 2365 | U | 2366 | G | 2368 | G | 2370 | A | 2371 | A | 2372 | C | 2373 | C | 2374 | * | G | 2400 | A | 2401 | U | 2402 | C | 2403 | A | 2404 | A | 2405 | C | 2406 | G | 2408 | A | 2411 | A | 2412 | A | 2413 | A | 2414 | cWW | cWH | cWW | cWH | cWW | cWW | cWW | cWW | tSS | tHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUA*UUUG*CG*CGCC*GCCUAGUGAACCGAUCAACGGAUAAAA | 1 |
| UUUA*UUUG*CG*CGCC*GCUUAGUGAACCGAUCAACGGAUAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*UU**GC*CCUAGUGAACAUCAACGGAUAAA | 1 |
| UU*UU**GC*CUUAGUGAACAUCAACGGAUAAA | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-F-tHW-F-cWW-cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.06 | Max 0.12
Coloring options: