Motif J6_83855.1 Version J6_83855.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | break | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 1-33 | 2-3 | 3-4 | 4-32 | 5-33 | 7-8 | 9-10 | 11-19 | 11-30 | 13-14 | 20-28 | 20-31 | 21-27 | 22-26 | 24-25 | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J6_8P9A_004 | 8P9A | 0.0000 | 5 | AR | LSU rRNA | U | 2416 | U | 2417 | A | 2419 | * | U | 2611 | U | 2612 | U | 2613 | G | 2614 | * | C | 2627 | A | 2628 | * | U | 2650 | G | 2651 | U | 2652 | C | 2653 | * | G | 2754 | C | 2755 | C | 2756 | U | 2757 | A | 2758 | U | 2759 | G | 2761 | A | 2762 | U | 2763 | C | 2764 | C | 2765 | * | G | 2793 | G | 2794 | U | 2795 | G | 2796 | C | 2797 | C | 2798 | G | 2800 | A | 2803 | A | 2804 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW | cWW | tHh | tSS | tHW | ntHW | cWW | |
| 2 | J6_4V9F_002 | 4V9F | 0.1641 | 5 | 0 | LSU rRNA | U | 2115 | U | 2116 | A | 2118 | * | U | 2276 | U | 2277 | U | 2278 | G | 2279 | * | C | 2292 | G | 2293 | * | C | 2315 | G | 2316 | C | 2317 | C | 2318 | * | G | 2421 | U | 2422 | C | 2423 | U | 2424 | A | 2425 | C | 2427 | G | 2428 | A | 2429 | A | 2430 | C | 2431 | C | 2432 | * | G | 2459 | A | 2460 | U | 2461 | G | 2462 | A | 2463 | C | 2464 | G | 2466 | A | 2469 | A | 2470 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | ntSW | cWW | cWW | tHh | tSS | tHW | cBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUGA*UUUG*CA*UGUC*GCCUAUCGAUCCGGUGCCAGAAAA | 1 |
| UUUA*UUUG*CG*CGCC*GUCUAGCGAACCGAUGACAGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG*UU**GU*CCUAUCGAUCGUGCCAGAAA | 1 |
| UU*UU**GC*UCUAGCGAACAUGACAGAAA | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-tSS-cWW-F-F-tHH-cWW-tHW-F-cWW-cWW-F-F-F-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.16 | Avg 0.08 | Max 0.16
Coloring options: