J6_8P9A_004
3D structure
- PDB id
- 8P9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Methyllissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8P9A|1|AR|G|2418, 8P9A|1|AR|C|2760, 8P9A|1|AR|A|2799, 8P9A|1|AR|A|2801, 8P9A|1|AR|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J6_99438.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-tSS-cWW-F-F-tHH-cWW-tHW-tHW-cWW-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8P9A|1|AR|U|2416
8P9A|1|AR|U|2417
8P9A|1|AR|G|2418
8P9A|1|AR|A|2419
*
8P9A|1|AR|U|2611
8P9A|1|AR|U|2612
8P9A|1|AR|U|2613
8P9A|1|AR|G|2614
*
8P9A|1|AR|C|2627
8P9A|1|AR|A|2628
*
8P9A|1|AR|U|2650
8P9A|1|AR|G|2651
8P9A|1|AR|U|2652
8P9A|1|AR|C|2653
*
8P9A|1|AR|G|2754
8P9A|1|AR|C|2755
8P9A|1|AR|C|2756
8P9A|1|AR|U|2757
8P9A|1|AR|A|2758
8P9A|1|AR|U|2759
8P9A|1|AR|C|2760
8P9A|1|AR|G|2761
8P9A|1|AR|A|2762
8P9A|1|AR|U|2763
8P9A|1|AR|C|2764
8P9A|1|AR|C|2765
*
8P9A|1|AR|G|2793
8P9A|1|AR|G|2794
8P9A|1|AR|U|2795
8P9A|1|AR|G|2796
8P9A|1|AR|C|2797
8P9A|1|AR|C|2798
8P9A|1|AR|A|2799
8P9A|1|AR|G|2800
8P9A|1|AR|A|2801
8P9A|1|AR|A|2802
8P9A|1|AR|A|2803
8P9A|1|AR|A|2804
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L2-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain CS
- 60S ribosomal protein L18-A
- Chain CV
- 60S ribosomal protein L21-A
- Chain DC
- 60S ribosomal protein L28
- Chain DD
- 60S ribosomal protein L29
- Chain DQ
- 60S ribosomal protein L42-A
Coloring options: