Motif J6_84807.2 Version J6_84807.2 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | break | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 1-33 | 2-3 | 3-4 | 4-32 | 5-33 | 7-8 | 9-10 | 11-30 | 13-14 | 20-28 | 20-31 | 21-27 | 22-26 | 24-25 | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J6_9E6Q_002 | 9E6Q | 0.1247 | 5 | 1 | LSU rRNA | U | 2194 | U | 2195 | A | 2197 | * | U | 2354 | U | 2355 | C | 2356 | G | 2357 | * | C | 2370 | A | 2371 | * | U | 2393 | G | 2394 | C | 2395 | C | 2396 | * | G | 2499 | C | 2500 | C | 2501 | U | 2502 | A | 2503 | G | 2504 | G | 2506 | A | 2507 | A | 2508 | C | 2509 | G | 2510 | * | OMC | 2538 | A | 2539 | U | 2540 | G | 2541 | A | 2542 | C | 2543 | G | 2545 | A | 2548 | A | 2549 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW | cWW | tHh | tSS | tHW | tHW | cWW |
| 2 | J6_8GLP_003 | 8GLP | 0.0894 | 5 | L5 | LSU rRNA | PSU | 3920 | U | 3921 | A | 3923 | * | U | 4188 | U | 4189 | U | 4190 | G | 4191 | * | C | 4204 | A | 4205 | * | OMU | 4227 | OMG | 4228 | U | 4229 | C | 4230 | * | G | 4331 | C | 4332 | C | 4333 | U | 4334 | C | 4335 | A | 4336 | G | 4338 | A | 4339 | U | 4340 | C | 4341 | C | 4342 | * | OMG | 4370 | G | 4371 | U | 4372 | G | 4373 | U | 4374 | C | 4375 | G | 4377 | A | 4380 | A | 4381 | cWW | cWH | cWW | ntsS | cWH | cWW | cWW | cWW | cWW | tHh | tSS | tHW | tHW | cWW |
| 3 | J6_9H3G_002 | 9H3G | 0.0530 | 5 | A | LSU rRNA | PSU | 2414 | U | 2415 | A | 2417 | * | U | 2610 | U | 2611 | U | 2612 | G | 2613 | * | C | 2626 | A | 2627 | * | UY1 | 2649 | OMG | 2650 | U | 2651 | C | 2652 | * | G | 2753 | C | 2754 | C | 2755 | U | 2756 | A | 2757 | U | 2758 | G | 2760 | A | 2761 | U | 2762 | C | 2763 | C | 2764 | * | OMG | 2792 | G | 2793 | U | 2794 | G | 2795 | U | 2796 | C | 2797 | G | 2799 | A | 2802 | A | 2803 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW | cWW | tHh | tSS | tHW | tHW | cWW |
| 4 | J6_8OI5_002 | 8OI5 | 0.0000 | 5 | 1 | LSU rRNA | U | 2394 | U | 2395 | A | 2397 | * | U | 2583 | U | 2584 | U | 2585 | G | 2586 | * | C | 2599 | A | 2600 | * | U | 2622 | G | 2623 | U | 2624 | C | 2625 | * | G | 2726 | C | 2727 | C | 2728 | U | 2729 | A | 2730 | U | 2731 | G | 2733 | A | 2734 | U | 2735 | C | 2736 | C | 2737 | * | G | 2765 | G | 2766 | U | 2767 | G | 2768 | C | 2769 | C | 2770 | G | 2772 | A | 2775 | A | 2776 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW | cWW | tHh | tSS | tHW | tHW | cWW |
| 5 | J6_8P9A_004 | 8P9A | 0.0483 | 5 | AR | LSU rRNA | U | 2416 | U | 2417 | A | 2419 | * | U | 2611 | U | 2612 | U | 2613 | G | 2614 | * | C | 2627 | A | 2628 | * | U | 2650 | G | 2651 | U | 2652 | C | 2653 | * | G | 2754 | C | 2755 | C | 2756 | U | 2757 | A | 2758 | U | 2759 | G | 2761 | A | 2762 | U | 2763 | C | 2764 | C | 2765 | * | G | 2793 | G | 2794 | U | 2795 | G | 2796 | C | 2797 | C | 2798 | G | 2800 | A | 2803 | A | 2804 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW | cWW | tHh | tSS | tHW | ntHW | cWW |
| 6 | J6_9AXU_003 | 9AXU | 0.0980 | 5 | 2 | LSU rRNA | U | 2504 | U | 2505 | A | 2507 | * | U | 2706 | U | 2707 | U | 2708 | G | 2709 | * | C | 2722 | A | 2723 | * | U | 2745 | G | 2746 | U | 2747 | C | 2748 | * | G | 2849 | C | 2850 | C | 2851 | U | 2852 | A | 2853 | U | 2854 | G | 2856 | A | 2857 | U | 2858 | C | 2859 | C | 2860 | * | G | 2888 | G | 2889 | U | 2890 | G | 2891 | C | 2892 | C | 2893 | G | 2895 | A | 2898 | A | 2899 | cWW | cWH | cWW | ntsS | cWH | cWW | ncWW | cWW | cWW | tHh | tSS | tHW | tHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUGA*UUUG*CA*UGUC*GCCUAUCGAUCCGGUGCCAGAAAA | 3 |
| UUCA*UUCG*CA*UGCC*GCCUAGAGAACGOMCAUGACAGAAAA | 1 |
| PSUUGA*UUUG*CA*OMU(OMG)UC*GCCUCACGAUCCOMGGUGUCAGAAAA | 1 |
| PSUUGA*UUUG*CA*UY1(OMG)UC*GCCUAUCGAUCCOMGGUGUCAGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG*UU**GU*CCUAUCGAUCGUGCCAGAAA | 3 |
| UC*UC**GC*CCUAGAGAACAUGACAGAAA | 1 |
| UG*UU**(OMG)U*CCUCACGAUCGUGUCAGAAA | 1 |
| UG*UU**(OMG)U*CCUAUCGAUCGUGUCAGAAA | 1 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-tSS-cWW-F-F-tHH-cWW-tHW-tHW-cWW-cWW-F-F-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.05 | Avg 0.09 | Max 0.14
Coloring options: