Motif J6_89510.1 Version J6_89510.1 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | break | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 1-35 | 2-3 | 3-4 | 3-34 | 5-35 | 7-8 | 9-10 | 11-30 | 13-14 | 19-31 | 20-27 | 21-25 | 23-24 | |||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J6_7A0S_002 | 7A0S | 0.0000 | 6 | X | LSU rRNA | U | 2057 | U | 2058 | A | 2060 | * | U | 2222 | U | 2223 | U | 2224 | G | 2225 | * | C | 2237 | G | 2238 | * | C | 2260 | G | 2261 | C | 2262 | C | 2263 | * | G | 2363 | C | 2364 | U | 2365 | U | 2366 | G | 2368 | G | 2370 | A | 2371 | A | 2372 | C | 2373 | C | 2374 | * | G | 2400 | A | 2401 | U | 2402 | C | 2403 | A | 2404 | A | 2405 | C | 2406 | G | 2408 | A | 2411 | A | 2412 | A | 2413 | A | 2414 | cWW | cWH | cWW | cWH | cWW | cWW | cWW | cWW | tSS | tHW | cWW | ||
| 2 | J6_7RQB_002 | 7RQB | 0.1087 | 6 | 1A | LSU rRNA | U | 2074 | U | 2075 | A | 2077 | * | U | 2243 | U | 2244 | U | 2245 | G | 2246 | * | C | 2258 | G | 2259 | * | C | 2281 | G | 2282 | C | 2283 | C | 2284 | * | G | 2384 | C | 2385 | C | 2386 | U | 2387 | G | 2389 | G | 2391 | A | 2392 | A | 2393 | C | 2394 | C | 2395 | * | G | 2421 | A | 2422 | U | 2423 | C | 2424 | A | 2425 | A | 2426 | C | 2427 | G | 2429 | A | 2432 | A | 2433 | A | 2434 | A | 2435 | cWW | cWH | cWW | ncsS | cWH | cWW | cWW | cWW | cWW | tSS | tHW | tHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUA*UUUG*CG*CGCC*GCUUAGUGAACCGAUCAACGGAUAAAA | 1 |
| UUUA*UUUG*CG*CGCC*GCCUAGUGAACCGAUCAACGGAUAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*UU**GC*CUUAGUGAACAUCAACGGAUAAA | 1 |
| UU*UU**GC*CCUAGUGAACAUCAACGGAUAAA | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-F-tHW-F-cWW-cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.05 | Max 0.11
Coloring options: