Motif J7_21233.1 Version J7_21233.1 of this group appears in releases 3.2 to 3.47

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8	break		9		10	break		11		12		13		14		15		16	break		17		18		19		20		21	break		22		23	break		24		25		26		27		28		29	1-29	2-28	3-27	4-13	5-12	6-7	8-9	10-11	14-20	15-19	16-17	21-22	23-24	26-27
1	J7_4Y4O_004	4Y4O	0.0744	3	2A	LSU rRNA	C	817	G	818	A	819	A	820	A	821	U	822	*	A	835	G	836	*	U	943	G	946	*	C	971	G	972	A	973	G	974	G	975\|\|\|A	C	976	*	G	987	A	988	G	989	A	990	C	991	*	G	1163	G	1164	*	C	1185	G	1186	G	1187	U	1188	A	1189	G	1190	cWW	tSH	tHW	tHH	tHS	cWW	cWW	cWW	tSH		cWW	cWW	cWW	ncSH
2	J7_4IOA_002	4IOA	0.0000	2	X	LSU rRNA	C	830	G	831	A	832	A	833	A	834	U	835	*	A	848	G	849	*	U	954	G	957	*	C	982	G	983	A	984	G	985	A	986	G	987	*	C	998	A	999	G	1000	A	1001	C	1002	*	G	1174	A	1175	*	U	1199	G	1200	G	1201	U	1202	A	1203	G	1204	cWW	tSH	tHW	tHH	tHS	cWW	cWW	cWW	tSH	tHS	cWW	cWW	cWW	cSH
3	J7_4WF9_002	4WF9	0.0970	2	X	LSU rRNA	C	862	G	863	A	864	A	865	A	866	U	867	*	A	880	G	881	*	U	987	G	990	*	C	1015	G	1016	A	1017	A	1018	A	1019	G	1020	*	C	1031	A	1032	G	1033	A	1034	C	1035	*	G	1207	A	1208	*	U	1224	G	1225	G	1226	U	1227	A	1228	G	1229	cWW	tSH	tHW	tHH	tHS	cWW	cWW	cWW	ntSH	tHS	cWW	cWW	cWW	cSH

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAAUAGUGAGCGAGCGCGAGACGGCGGUAG	1
CGAAAUAGUGAGCGAGAGCAGACGAUGGUAG	1
CGAAAUAGUCAGCGAAAGCAGACGAUGGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAA*GAGAGCG*AGAGGUA	1
GAAA*GAGAGA*AGAGGUA	1
GAAA*CAGAAA*AGAGGUA	1

Release history

Release	3.2	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47
Date	2018-02-09	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21
Status	New id, no parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-tSH-tHW-cSH-tHH-tHS-F-cWW-cWW-cWW-cWW-cWW-tSH-tHS-F-cWW
Heat map statistics: Min 0.07 | Avg 0.06 | Max 0.11

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