3D structure

PDB id
4IOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAAAU*AG*UGAG*CGAGAG*CAGAC*GA*UGGUAG
Length
31 nucleotides
Bulged bases
4IOA|1|X|G|955, 4IOA|1|X|A|956
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J7_21233.1
Basepair signature
cWW-tSH-tHW-cSH-tHH-tHS-F-cWW-cWW-cWW-cWW-cWW-tSH-tHS-F-cWW
Number of instances in this motif group
3

Unit IDs

4IOA|1|X|C|830
4IOA|1|X|G|831
4IOA|1|X|A|832
4IOA|1|X|A|833
4IOA|1|X|A|834
4IOA|1|X|U|835
*
4IOA|1|X|A|848
4IOA|1|X|G|849
*
4IOA|1|X|U|954
4IOA|1|X|G|955
4IOA|1|X|A|956
4IOA|1|X|G|957
*
4IOA|1|X|C|982
4IOA|1|X|G|983
4IOA|1|X|A|984
4IOA|1|X|G|985
4IOA|1|X|A|986
4IOA|1|X|G|987
*
4IOA|1|X|C|998
4IOA|1|X|A|999
4IOA|1|X|G|1000
4IOA|1|X|A|1001
4IOA|1|X|C|1002
*
4IOA|1|X|G|1174
4IOA|1|X|A|1175
*
4IOA|1|X|U|1199
4IOA|1|X|G|1200
4IOA|1|X|G|1201
4IOA|1|X|U|1202
4IOA|1|X|A|1203
4IOA|1|X|G|1204

Current chains

Chain X
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain I
50S ribosomal protein L15
Chain N
50S ribosomal protein L20
Chain O
50S ribosomal protein L21
Chain W
50S ribosomal protein L30
Chain Y
5S ribosomal RNA; 5S rRNA

Coloring options:

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