Motif J7_21233.5 Version J7_21233.5 of this group appears in releases 3.91 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | break | 9 | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 17 | break | 18 | 19 | 20 | 21 | 22 | break | 23 | 24 | break | 25 | 26 | 27 | 28 | 29 | 30 | 1-30 | 2-29 | 3-28 | 4-14 | 5-13 | 6-7 | 8-9 | 11-12 | 14-26 | 15-21 | 16-20 | 17-18 | 22-23 | 24-25 | 27-28 | ||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J7_4WF9_002 | 4WF9 | 0.1062 | 1 | X | LSU rRNA | C | 862 | G | 863 | A | 864 | A | 865 | A | 866 | U | 867 | * | A | 880 | G | 881 | * | U | 987 | C | 988 | G | 990 | * | C | 1015 | G | 1016 | A | 1017 | A | 1018 | A | 1019 | G | 1020 | * | C | 1031 | A | 1032 | G | 1033 | A | 1034 | C | 1035 | * | G | 1207 | A | 1208 | * | U | 1224 | G | 1225 | G | 1226 | U | 1227 | A | 1228 | G | 1229 | cWW | tSH | tHW | tHH | tHS | cWW | cWW | cWW | ntSH | tHS | cWW | cWW | cWW | cSH | |
| 2 | J7_7A0S_002 | 7A0S | 0.0000 | 1 | X | LSU rRNA | C | 830 | G | 831 | A | 832 | A | 833 | A | 834 | U | 835 | * | A | 848 | G | 849 | * | U | 954 | G | 955 | G | 957 | * | C | 982 | G | 983 | A | 984 | G | 985 | A | 986 | G | 987 | * | C | 998 | A | 999 | G | 1000 | A | 1001 | C | 1002 | * | G | 1174 | A | 1175 | * | U | 1199 | G | 1200 | G | 1201 | U | 1202 | A | 1203 | G | 1204 | cWW | tSH | tHW | ntHH | tHS | cWW | cWW | cWW | ncSW | ntSH | ntHS | cWW | cWW | cWW | cSH |
| 3 | J7_9DFE_002 | 9DFE | 0.1017 | 2 | 1A | LSU rRNA | C | 817 | G | 818 | A | 819 | A | 820 | A | 821 | U | 822 | * | A | 835 | G | 836 | * | U | 943 | G | 944 | G | 946 | * | C | 971 | G | 972 | A | 973 | G | 974 | G | 975|||A | C | 976 | * | G | 987 | A | 988 | G | 989 | A | 990 | C | 991 | * | G | 1163 | G | 1164 | * | C | 1185 | G | 1186 | G | 1187 | U | 1188 | A | 1189 | G | 1190 | cWW | tSH | tHW | tHH | tHS | cWW | cWW | cWW | tSH | cWW | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAAU*AG*UCAG*CGAAAG*CAGACGAUGGUAG | 1 |
| CGAAAU*AG*UGAG*CGAGAG*CAGACGAUGGUAG | 1 |
| CGAAAU*AG*UGAG*CGAGCGC*GAGACGGCGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA**CA*GAAA*AGAGGUA | 1 |
| GAAA**GA*GAGA*AGAGGUA | 1 |
| GAAA**GA*GAGCG*AGAGGUA | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-tHW-cSH-tHH-tHS-F-cWW-cWW-cWW-cWW-F-tSH-cWW-tHS-F-cWW
- Heat map statistics
- Min 0.10 | Avg 0.07 | Max 0.12
Coloring options: