Motif J7_60081.4 Version J7_60081.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | break | 9 | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 17 | break | 18 | 19 | 20 | 21 | 22 | break | 23 | 24 | break | 25 | 26 | 27 | 28 | 29 | 30 | 1-30 | 2-29 | 3-28 | 4-14 | 5-13 | 6-7 | 8-9 | 11-12 | 15-20 | 16-19 | 17-18 | 22-23 | 24-25 | 27-28 | ||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J7_9H3G_001 | 9H3G | 0.0595 | 1 | A | LSU rRNA | C | 958 | G | 959 | A | 960 | A | 961 | G | 962 | U | 963 | * | A | 976 | G | 977 | * | U | 1123 | G | 1124 | G | 1126 | * | C | 1150 | G | 1151 | A | 1152 | U | 1153 | G | 1154 | C | 1155 | * | G | 1166 | G | 1167 | A | 1168 | A | 1169 | G | 1170 | * | C | 1348 | C | 1349 | * | G | 1375 | A2M | 1376 | G | 1377 | U | 1378 | A | 1379 | G | 1380 | cWW | tSH | tHW | tHH | cWW | cWW | cWW | cWH | tHS | cWW | cWW | cWW | cSH | |
| 2 | J7_8GLP_001 | 8GLP | 0.0418 | 1 | L5 | LSU rRNA | C | 1666 | G | 1667 | A | 1668 | A | 1669 | G | 1670 | U | 1671 | * | A | 1684 | G | 1685 | * | U | 1852 | G | 1853 | G | 1855 | * | C | 1879 | G | 1880 | OMC | 1881 | U | 1882 | G | 1883 | C | 1884 | * | G | 1895 | A | 1896 | A | 1897 | C | 1898 | G | 1899 | * | C | 2077 | C | 2078 | * | G | 2278 | A | 2279 | G | 2280 | U | 2281 | A | 2282 | G | 2283 | cWW | tSH | tHW | tHH | cWW | cWW | cWW | cWH | cWW | cWW | cWW | cSH | ||
| 3 | J7_9SUM_001 | 9SUM | 0.0000 | 1 | A | LSU rRNA | C | 892 | G | 893 | A | 894 | A | 895 | G | 896 | U | 897 | * | A | 910 | G | 911 | * | U | 1061 | G | 1062 | G | 1064 | * | C | 1088 | G | 1089 | A | 1090 | U | 1091 | G | 1092 | C | 1093 | * | G | 1104 | A | 1105 | A | 1106 | C | 1107 | G | 1108 | * | C | 1285 | C | 1286 | * | G | 1309 | A | 1310 | G | 1311 | U | 1312 | A | 1313 | G | 1314 | cWW | tSH | tHW | ntHH | ntHS | cWW | cWW | cWW | cWH | cWW | cWW | cWW | cSH | |
| 4 | J7_8OI5_001 | 8OI5 | 0.0363 | 1 | 1 | LSU rRNA | C | 945 | G | 946 | A | 947 | A | 948 | G | 949 | U | 950 | * | A | 963 | G | 964 | * | U | 1110 | G | 1111 | G | 1113 | * | C | 1137 | G | 1138 | A | 1139 | U | 1140 | G | 1141 | C | 1142 | * | G | 1153 | A | 1154 | A | 1155 | C | 1156 | G | 1157 | * | C | 1334 | C | 1335 | * | G | 1361 | A | 1362 | G | 1363 | U | 1364 | A | 1365 | G | 1366 | cWW | tSH | tHW | ntHH | cWW | cWW | cWW | cWH | cWW | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAGU*AG*UGGG*CGAUGC*GAACGCCGAGUAG | 2 |
| CGAAGU*AG*UGGG*CGAUGC*GGAAGCCG(A2M)GUAG | 1 |
| CGAAGU*AG*UGGG*CG(OMC)UGC*GAACGCCGAGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAG**GG*GAUG*AACAGUA | 2 |
| GAAG**GG*GAUG*GAA(A2M)GUA | 1 |
| GAAG**GG*G(OMC)UG*AACAGUA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-tHW-cSH-tHH-F-F-cWW-cWW-cWW-cWW-F-F-cWW-cWH-F-F-cWW-F
- Heat map statistics
- Min 0.04 | Avg 0.04 | Max 0.06
Coloring options: