J7_9SUM_001

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

9SUM|1|A|G|1063

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J7_60081.4

Basepair signature

cWW-tSH-tHW-cSH-tHH-F-F-cWW-cWW-cWW-cWW-F-F-cWW-cWH-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9SUM|1|A|C|892
9SUM|1|A|G|893
9SUM|1|A|A|894
9SUM|1|A|A|895
9SUM|1|A|G|896
9SUM|1|A|U|897
*
9SUM|1|A|A|910
9SUM|1|A|G|911
*
9SUM|1|A|U|1061
9SUM|1|A|G|1062
9SUM|1|A|G|1063
9SUM|1|A|G|1064
*
9SUM|1|A|C|1088
9SUM|1|A|G|1089
9SUM|1|A|A|1090
9SUM|1|A|U|1091
9SUM|1|A|G|1092
9SUM|1|A|C|1093
*
9SUM|1|A|G|1104
9SUM|1|A|A|1105
9SUM|1|A|A|1106
9SUM|1|A|C|1107
9SUM|1|A|G|1108
*
9SUM|1|A|C|1285
9SUM|1|A|C|1286
*
9SUM|1|A|G|1309
9SUM|1|A|A|1310
9SUM|1|A|G|1311
9SUM|1|A|U|1312
9SUM|1|A|A|1313
9SUM|1|A|G|1314

Current chains

Chain A

25S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

60S ribosomal protein L4-A

Chain I

60S ribosomal protein L7

Chain N

60S ribosomal protein L13

Chain S

60S ribosomal protein L18-A

Chain V

60S ribosomal protein L21-A

Chain c

60S ribosomal protein L28

Chain d

60S ribosomal protein L29

Chain g

60S ribosomal protein L32

Chain h

60S ribosomal protein L33-A