Equivalence class NR_3.5_84517.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5FJC|1|A (rep) | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU | X-ray diffraction | 1.71 | 2016-05-25 |
| 2 | 5FK4|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU | X-ray diffraction | 2.43 | 2016-05-25 |
| 3 | 2YGH|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionine | X-ray diffraction | 2.6 | 2011-09-07 |
| 4 | 3GX5|1|A | RNA (94-MER) | Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM | X-ray diffraction | 2.4 | 2010-01-12 | ||||
| 5 | 4B5R|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui K-t-7 | X-ray diffraction | 2.95 | 2013-01-30 |
| 6 | 5FK3|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC | X-ray diffraction | 2.5 | 2016-05-25 |
| 7 | 5FK2|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG | X-ray diffraction | 2.6 | 2016-05-25 |
| 8 | 5FKF|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC | X-ray diffraction | 2.8 | 2016-05-25 |
| 9 | 3GX3|1|A | RNA (94-MER) | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH | X-ray diffraction | 2.7 | 2010-01-12 | ||||
| 10 | 5FK6|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA | X-ray diffraction | 2.5 | 2016-05-25 |
| 11 | 3IQR|1|A | SAM-I riboswitch | SAM-I riboswitch from T. tencongensis variant A94G bound with SAM | X-ray diffraction | 2.55 | 2010-08-04 | ||||
| 12 | 7EAF|1|A | SAM riboswitch | RNA (94-MER) | Caldanaerobacter subterraneus subsp. tengcongensis | Bacteria | RF00162 | Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn | X-ray diffraction | 2.85 | 2021-06-02 |
| 13 | 3IQP|1|A | SAM-I riboswitch | SAM-I riboswitch from T. tencongensis variant A94G apo form | X-ray diffraction | 2.9 | 2010-08-04 | ||||
| 14 | 3GX7|1|A | RNA (94-MER) | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAM | X-ray diffraction | 2.95 | 2010-01-12 | ||||
| 15 | 3IQN|1|A | SAM-I riboswitch | Free-state structural transitions of the SAM-I riboswitch | X-ray diffraction | 2.7 | 2010-08-04 | ||||
| 16 | 5FK1|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG | X-ray diffraction | 2.5 | 2016-05-25 |
| 17 | 5FKD|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA | X-ray diffraction | 3 | 2016-05-25 |
| 18 | 2GIS|1|A | SAM-I riboswitch | Structure of the S-adenosylmethionine riboswitch mRNA regulatory element | X-ray diffraction | 2.9 | 2006-07-04 | ||||
| 19 | 2YDH|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM | X-ray diffraction | 2.9 | 2011-09-07 |
| 20 | 3GX2|1|A | RNA (94-MER) | TteSAM-I riboswitch variant A94GU34C bound to sinefungin | X-ray diffraction | 2.9 | 2010-01-12 | ||||
| 21 | 5FKH|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU | X-ray diffraction | 2.65 | 2016-05-25 |
| 22 | 5FKG|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG | X-ray diffraction | 2.95 | 2016-05-25 |
| 23 | 5FKE|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU | X-ray diffraction | 2.8 | 2016-05-25 |
| 24 | 3GX6|1|A | RNA (94-MER) | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride | X-ray diffraction | 2.8 | 2010-01-12 | ||||
| 25 | 5FK5|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA | X-ray diffraction | 3.32 | 2016-05-25 |
Release history
| Release | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 |
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| Date | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_84517.1 | NR_3.5_31222.1 | 3.181 | (13) 4B5R|1|A, 5FJC|1|A, 5FK1|1|A, 5FK2|1|A, 5FK3|1|A, 5FK4|1|A, 5FK5|1|A, 5FK6|1|A, 5FKD|1|A, 5FKE|1|A, 5FKF|1|A, 5FKG|1|A, 5FKH|1|A | (12) 2GIS|1|A, 2YDH|1|A, 2YGH|1|A, 3GX2|1|A, 3GX3|1|A, 3GX5|1|A, 3GX6|1|A, 3GX7|1|A, 3IQN|1|A, 3IQP|1|A, 3IQR|1|A, 7EAF|1|A | (0) |
| NR_3.5_84517.1 | NR_3.5_82809.4 | 3.181 | (11) 2GIS|1|A, 2YDH|1|A, 2YGH|1|A, 3GX2|1|A, 3GX3|1|A, 3GX5|1|A, 3GX6|1|A, 3GX7|1|A, 3IQN|1|A, 3IQP|1|A, 3IQR|1|A | (14) 4B5R|1|A, 5FJC|1|A, 5FK1|1|A, 5FK2|1|A, 5FK3|1|A, 5FK4|1|A, 5FK5|1|A, 5FK6|1|A, 5FKD|1|A, 5FKE|1|A, 5FKF|1|A, 5FKG|1|A, 5FKH|1|A, 7EAF|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5FJC|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU | X-RAY DIFFRACTION | 1.71 | 96 | |
| 2 | 4B5R|1|A | SAM-I riboswitch bearing the H. marismortui K-t-7 | X-RAY DIFFRACTION | 2.95 | 94 | |
| 3 | 5FK4|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU | X-RAY DIFFRACTION | 2.43 | 93 | |
| 4 | 5FKG|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG | X-RAY DIFFRACTION | 2.95 | 94 | |
| 5 | 5FK5|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA | X-RAY DIFFRACTION | 3.32 | 94 | |
| 6 | 5FKH|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU | X-RAY DIFFRACTION | 2.65 | 94 | |
| 7 | 5FKE|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU | X-RAY DIFFRACTION | 2.8 | 94 | |
| 8 | 5FKD|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA | X-RAY DIFFRACTION | 3 | 94 | |
| 9 | 5FK6|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA | X-RAY DIFFRACTION | 2.5 | 94 | |
| 10 | 5FK2|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG | X-RAY DIFFRACTION | 2.6 | 94 | |
| 11 | 5FK3|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC | X-RAY DIFFRACTION | 2.5 | 95 | |
| 12 | 5FK1|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG | X-RAY DIFFRACTION | 2.5 | 94 | |
| 13 | 5FKF|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC | X-RAY DIFFRACTION | 2.8 | 94 | |
| 14 | 7EAF|1|A | Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn | X-RAY DIFFRACTION | 2.85 | 95 | |
| 15 | 3GX3|1|A | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH | X-RAY DIFFRACTION | 2.7 | 94 | |
| 16 | 3GX7|1|A | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAM | X-RAY DIFFRACTION | 2.95 | 94 | |
| 17 | 3GX6|1|A | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride | X-RAY DIFFRACTION | 2.8 | 94 | |
| 18 | 2YDH|1|A | Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM | X-RAY DIFFRACTION | 2.9 | 94 | |
| 19 | 3GX5|1|A | Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM | X-RAY DIFFRACTION | 2.4 | 94 | |
| 20 | 3GX2|1|A | TteSAM-I riboswitch variant A94GU34C bound to sinefungin | X-RAY DIFFRACTION | 2.9 | 94 | |
| 21 | 2GIS|1|A | Structure of the S-adenosylmethionine riboswitch mRNA regulatory element | X-RAY DIFFRACTION | 2.9 | 94 | |
| 22 | 3IQN|1|A | Free-state structural transitions of the SAM-I riboswitch | X-RAY DIFFRACTION | 2.7 | 94 | |
| 23 | 3IQR|1|A | SAM-I riboswitch from T. tencongensis variant A94G bound with SAM | X-RAY DIFFRACTION | 2.55 | 94 | |
| 24 | 3IQP|1|A | SAM-I riboswitch from T. tencongensis variant A94G apo form | X-RAY DIFFRACTION | 2.9 | 94 | |
| 25 | 2YGH|1|A | SAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionine | X-RAY DIFFRACTION | 2.6 | 94 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: