RNA 3D Hub //

Equivalence class NR_all_80570.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15CEU|1|D (rep)RNA (5'-R(P*AP*A)-3')Crystal structure of Rv2837c complexed with 5'-pApAX-ray diffraction2.362015-12-23
25CEU|1|CRNA (5'-R(P*AP*A)-3')Crystal structure of Rv2837c complexed with 5'-pApAX-ray diffraction2.362015-12-23
34EJT|1|G5'-R(*AP*A)-3'Staphylococcus epidermidis TcaR in complex with RNAX-ray diffraction32013-06-05
43J0O|1|wmRNA fragmentOryctolagus cuniculusCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2Electron microscopy92011-11-16
53J0Q|1|wmRNA fragmentOryctolagus cuniculusCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2Electron microscopy10.62011-11-16
63J0P|1|wmRNA fragmentOryctolagus cuniculusCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1Electron microscopy10.62011-11-16
73J0L|1|wmRNA fragmentOryctolagus cuniculusCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1Electron microscopy9.82011-11-16

Release history

Release2.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.73
Date2015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_80570.3NR_all_80570.22.55(5) 3J0L|1|w, 3J0O|1|w, 3J0P|1|w, 3J0Q|1|w, 4EJT|1|G(2) 5CEU|1|C, 5CEU|1|D(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_80570.3NR_2.5_80570.42.74(2) 5CEU|1|C, 5CEU|1|D(5) 3J0L|1|w, 3J0O|1|w, 3J0P|1|w, 3J0Q|1|w, 4EJT|1|G(1) 5JJU|1|C
NR_all_80570.3NR_20.0_80570.42.74(7) 3J0L|1|w, 3J0O|1|w, 3J0P|1|w, 3J0Q|1|w, 4EJT|1|G, 5CEU|1|C, 5CEU|1|D(0) (1) 5JJU|1|C
NR_all_80570.3NR_3.0_80570.42.74(3) 4EJT|1|G, 5CEU|1|C, 5CEU|1|D(4) 3J0L|1|w, 3J0O|1|w, 3J0P|1|w, 3J0Q|1|w(1) 5JJU|1|C
NR_all_80570.3NR_3.5_80570.42.74(3) 4EJT|1|G, 5CEU|1|C, 5CEU|1|D(4) 3J0L|1|w, 3J0O|1|w, 3J0P|1|w, 3J0Q|1|w(1) 5JJU|1|C
NR_all_80570.3NR_4.0_80570.42.74(3) 4EJT|1|G, 5CEU|1|C, 5CEU|1|D(4) 3J0L|1|w, 3J0O|1|w, 3J0P|1|w, 3J0Q|1|w(1) 5JJU|1|C
NR_all_80570.3NR_all_80570.42.74(7) 3J0L|1|w, 3J0O|1|w, 3J0P|1|w, 3J0Q|1|w, 4EJT|1|G, 5CEU|1|C, 5CEU|1|D(0) (1) 5JJU|1|C

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
13J0O|1|wCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2ELECTRON MICROSCOPY92
23J0L|1|wCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1ELECTRON MICROSCOPY9.82
33J0Q|1|wCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2ELECTRON MICROSCOPY10.62
43J0P|1|wCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1ELECTRON MICROSCOPY10.62
54EJT|1|GStaphylococcus epidermidis TcaR in complex with RNAX-RAY DIFFRACTION32
65CEU|1|DCrystal structure of Rv2837c complexed with 5'-pApAX-RAY DIFFRACTION2.362
75CEU|1|CCrystal structure of Rv2837c complexed with 5'-pApAX-RAY DIFFRACTION2.362

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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