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11DG Summary

View in PDB or NAKB
Circular interaction diagram
Structure title
Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
Authors
Raskar, T., Badran, A., Fraser, J.
Release date
2026-04-08
Experimental technique
ELECTRON MICROSCOPY
Resolution
3.0 Å
Chains
4 RNA chains from Escherichia coli
49 other chains
Nucleic acid compounds
E-site tRNA, 16S ribosomal RNA, 23S ribosomal RNA, 5S ribosomal RNA
Other compounds
50S ribosomal protein L33, Large ribosomal subunit protein bL34, 50S ribosomal protein L35, Large ribosomal subunit protein bL36A, 50S ribosomal protein L31, Small ribosomal subunit protein uS2, 30S ribosomal protein S3, Small ribosomal subunit protein uS4, Small ribosomal subunit protein uS5, Small ribosomal subunit protein bS6, Small ribosomal subunit protein uS7, Small ribosomal subunit protein uS8, Small ribosomal subunit protein uS9, Small ribosomal subunit protein uS10, Small ribosomal subunit protein uS11, 30S ribosomal protein S12, Small ribosomal subunit protein uS13, Small ribosomal subunit protein uS14, Small ribosomal subunit protein uS15, Small ribosomal subunit protein bS16, Small ribosomal subunit protein uS17, Small ribosomal subunit protein bS18, Small ribosomal subunit protein uS19, Small ribosomal subunit protein bS20, Small ribosomal subunit protein bS21, 50S ribosomal protein L2, 50S ribosomal protein L3, Large ribosomal subunit protein uL4, Large ribosomal subunit protein uL5, Large ribosomal subunit protein uL6, Large ribosomal subunit protein bL9, Large ribosomal subunit protein uL13, Large ribosomal subunit protein uL14, Large ribosomal subunit protein uL15, Large ribosomal subunit protein uL16, Large ribosomal subunit protein bL17, Large ribosomal subunit protein uL18, Large ribosomal subunit protein bL19, 50S ribosomal protein L20, Large ribosomal subunit protein bL21, Large ribosomal subunit protein uL22, 50S ribosomal protein L23, 50S ribosomal protein L24, Large ribosomal subunit protein bL25, 50S ribosomal protein L27, 50S ribosomal protein L28, Large ribosomal subunit protein uL29, 50S ribosomal protein L30, 50S ribosomal protein L32

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 11DG contains:
  • 98 hairpin loops from 0 motif groups
  • 162 internal loops from 0 motif groups
  • 57 junction loops from 0 motif groups
More

3D Redundancy

11DG has chains which belong to the following equivalence classes in the current representative set:

Similar structures

9Q87 7QIW 7QIZ 7K00 9R3A 1VY6 11BQ 1VY6 4A3G 4A3J 7NBU 3J9M 5MMI 6NU3 6NU2 7A5G 3J5L 7A5K 8AYE 8QOA 8PVA
Structures from NR_all_24191.5
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