1KD5 Summary
- Structure title
- The Crystal Structure of r(GGUCACAGCCC)2 metal free form
- Authors
- Kacer, V., Scaringe, S.A., Scarsdale, J.N., Rife, J.P.
- Release date
- 2003-03-04
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 1.6 Å
- Chains
- 2 RNA chains from unknown source
- 0 other chains
- Nucleic acid compounds
- Other compounds
- 5'-R(*GP*GP*UP*CP*AP*CP*AP*GP*CP*CP*C)-3', 5'-R(*GP*GP*UP*CP*AP*CP*AP*GP*CP*CP*C)-3'
Pairwise Interactions
Interactions annotated by FR3D:- 10 base-pairs
- 24 base-stacking
- 0 base-phosphate
- 0 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 1KD5 contains:- 1 hairpin loop from 0 motif groups
- 1 internal loop from 1 motif group
- 0 junction loops from 0 motif groups
3D Redundancy
1KD5 has chains which belong to the following equivalence classes in the current representative set:- NR_all_03986.3 (1) rep
- NR_4.0_03986.3 (1) rep
- NR_3.5_03986.3 (1) rep
- NR_3.0_03986.3 (1) rep
- NR_20.0_03986.3 (1) rep
- NR_2.5_03986.3 (1) rep
- NR_2.0_03986.3 (1) rep