1SA9 Summary
- Structure title
- Crystal Structure of the RNA octamer GGCGAGCC
- Authors
- Jang, S.B., Baeyens, K., Jeong, M.S., SantaLucia Jr, J., Turner, D., Holbrook, S.R.
- Release date
- 2004-05-18
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
- Chains
- 5 RNA chains from unknown source
- 0 other chains
- Nucleic acid compounds
- Other compounds
- 5'-R(*GP*GP*CP*GP*AP*GP*CP*C)-3', 5'-R(*GP*GP*CP*GP*AP*GP*CP*C)-3', 5'-R(*GP*GP*CP*GP*AP*GP*CP*C)-3', 5'-R(*GP*GP*CP*GP*AP*GP*CP*C)-3', 5'-R(*GP*GP*CP*GP*AP*GP*CP*C)-3'
Pairwise Interactions
Interactions annotated by FR3D:- 23 base-pairs
- 52 base-stacking
- 0 base-phosphate
- 2 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 1SA9 contains:- 0 hairpin loops from 0 motif groups
- 3 internal loops from 1 motif group
- 0 junction loops from 0 motif groups
3D Redundancy
1SA9 has chains which belong to the following equivalence classes in the current representative set:- NR_all_99363.3 (3) rep
- NR_4.0_99363.3 (3) rep
- NR_3.5_99363.3 (3) rep
- NR_3.0_99363.3 (3) rep
- NR_20.0_99363.3 (3) rep