22YN Summary
- Structure title
- Rotated 80S with A/A'-P/E tRNA
- Authors
- Wu, M., Yuan, S.
- Release date
- 2026-11-04
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
- Chains
- 7 RNA chains from Saccharomyces cerevisiae S288C
- 74 other chains
- Nucleic acid compounds
- Other compounds
- RNA (76-MER), tRNA, RNA (3393-MER), RNA (121-MER), RNA (158-MER), RNA(1770-MER), RNA (5'-R(P*UP*GP*AP*CP*GP*CP*UP*UP*UP*UP*C)-3')
- Large ribosomal subunit protein uL2A, Large ribosomal subunit protein uL3, Large ribosomal subunit protein uL4A, Large ribosomal subunit protein uL18, Large ribosomal subunit protein eL6B, Large ribosomal subunit protein uL30A, Large ribosomal subunit protein eL8A, Large ribosomal subunit protein uL6A, Large ribosomal subunit protein uL16, Large ribosomal subunit protein uL5B, Large ribosomal subunit protein eL13A, Large ribosomal subunit protein eL14A, Large ribosomal subunit protein eL15A, Large ribosomal subunit protein uL13A, Large ribosomal subunit protein uL22A, Large ribosomal subunit protein eL18A, Large ribosomal subunit protein eL19A, Large ribosomal subunit protein eL20A, Large ribosomal subunit protein eL21A, Large ribosomal subunit protein eL22A, Large ribosomal subunit protein uL14A, Large ribosomal subunit protein eL24A, Large ribosomal subunit protein uL23, Large ribosomal subunit protein uL24A, Large ribosomal subunit protein eL27A, Large ribosomal subunit protein uL15, Large ribosomal subunit protein eL29, Large ribosomal subunit protein eL30, Large ribosomal subunit protein eL31A, Large ribosomal subunit protein eL32, Large ribosomal subunit protein eL33A, Large ribosomal subunit protein eL34A, Large ribosomal subunit protein uL29A, Large ribosomal subunit protein eL36A, Large ribosomal subunit protein eL37A, Large ribosomal subunit protein eL38, Large ribosomal subunit protein eL39, Large ribosomal subunit protein eL40A, Large ribosomal subunit protein eL41A, Large ribosomal subunit protein eL42A, Large ribosomal subunit protein eL43A, Small ribosomal subunit protein uS3, Small ribosomal subunit protein uS7, Small ribosomal subunit protein eS10A, Small ribosomal subunit protein eS12, Small ribosomal subunit protein uS19, Small ribosomal subunit protein uS9A, Small ribosomal subunit protein eS17B, Small ribosomal subunit protein uS13A, Small ribosomal subunit protein eS19A, Small ribosomal subunit protein uS10, Small ribosomal subunit protein eS25A, Small ribosomal subunit protein eS28A, Small ribosomal subunit protein uS14A, Small ribosomal subunit protein eS31, Small ribosomal subunit protein RACK1, Small ribosomal subunit protein uS2A, Small ribosomal subunit protein eS1A, Small ribosomal subunit protein uS5, Small ribosomal subunit protein eS4A, Small ribosomal subunit protein eS6A, Small ribosomal subunit protein eS7A, Small ribosomal subunit protein eS8A, Small ribosomal subunit protein uS4A, Small ribosomal subunit protein uS17A, Small ribosomal subunit protein uS15, Small ribosomal subunit protein uS11B, Small ribosomal subunit protein eS21A, Small ribosomal subunit protein uS8A, Small ribosomal subunit protein uS12A, Small ribosomal subunit protein eS24A, Small ribosomal subunit protein eS26B, Small ribosomal subunit protein eS27A, Small ribosomal subunit protein eS30A
Pairwise Interactions
Interactions annotated by FR3D:- 1,828 base-pairs
- 4,741 base-stacking
- 508 base-phosphate
- 537 base-ribose
- 239 oxygen stacking
- 348 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 22YN contains:- 118 hairpin loops from 0 motif groups
- 233 internal loops from 0 motif groups
- 70 junction loops from 0 motif groups
3D Redundancy
22YN has chains which belong to the following equivalence classes in the current representative set:- NR_all_90506.87 (1)
- NR_all_83593.12 (1)
- NR_all_11689.9 (1)
- NR_all_18586.80 (1)
- NR_all_03510.76 (1)
- NR_4.0_90506.87 (1)
- NR_4.0_83593.12 (1)
- NR_4.0_11689.9 (1)
- NR_4.0_18586.80 (1)
- NR_4.0_03510.76 (1)
- NR_3.5_90506.87 (1)
- NR_3.5_83593.12 (1)
- NR_3.5_11689.9 (1)
- NR_3.5_18586.80 (1)
- NR_3.5_03510.76 (1)
- NR_3.0_90506.87 (1)
- NR_3.0_83593.12 (1)
- NR_3.0_11689.9 (1)
- NR_3.0_18586.80 (1)
- NR_3.0_03510.76 (1)
- NR_20.0_90506.87 (1)
- NR_20.0_83593.12 (1)
- NR_20.0_11689.9 (1)
- NR_20.0_18586.80 (1)
- NR_20.0_03510.76 (1)
Similar structures
5AXM 1EVV 6XZB 9YPG 9YPO 8CDR 23AR 8CEH 6LVR 5AXN 9YPS 5M1J 1OB2 9YPW 9YPY 9YPV 6LVR 9YPT 3WC2 8CF5 22YP 9Y4G 9F9S 6GQV 6XIQ 6GZ3 8CTH 6XIR 3WC2 6XIQ 6GQB 6GZ5 23EZ 8CG8 6GQ1 6XIR 4V69 1SZ1 1SZ1 1QZB 1QZA 4TNA 1EHZ 1LS2 8CCS 8CIV 1I9V 1TN1 1TN2 4TRA 6TNA 1TTT 1TTT 1TTT 6XZ7 1JGQ 8CDL 1TRA 8CKU 1JGQ 4V42 1JGO 4V42 1JGO 1JGP 1JGP 1FCW 1FCW 1FCW 1FCW 1FCWStructures from NR_all_83593.12