2AZX Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2AZX_002 | 1/C/531:539 | tRNA anticodon loop | geometric HL_2AZX_005 HL_06059.5 | |
| HL_2AZX_004 | 1/D/513:522 | tRNA D-loop HL_20811.4 | ||
| HL_2AZX_005 | 1/D/531:539 | tRNA anticodon loop HL_06059.5 | ||
| HL_2AZX_003 | 1/C/553:561 | T-loop with 2 stacked bulged bases | geometric HL_3EPH_003 HL_28252.7 | |
| HL_2AZX_006 | 1/D/553:561 | T-loop with 2 stacked bulged bases HL_28252.7 | ||
| HL_2AZX_007 | 1/D/513:522 | tRNA D-loop | geometric HL_2AZX_004 HL_20811.4 | |
| HL_2AZX_008 | 1/D/531:539 | tRNA anticodon loop | ||
| HL_2AZX_009 | 1/D/553:561 | T-loop with 2 stacked bulged bases | ||
| HL_2AZX_011 | 1/C/531:539 | tRNA anticodon loop | geometric HL_2AZX_005 HL_06059.5 | |
| HL_2AZX_012 | 1/C/553:561 | T-loop with 2 stacked bulged bases | geometric HL_3EPH_003 HL_28252.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2AZX_001 | tRNA D-loop | ||
| HL_2AZX_010 | tRNA D-loop |
Valid loops
No loops found
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_2AZX_001 | 1/C/507:510, 1/C/525:527, 1/C/543:549, 1/C/565:566 | No text annotation | ||
| J4_2AZX_002 | 1/D/507:510, 1/D/525:527, 1/D/543:549, 1/D/565:566 | tRNA junction J4_70449.27 | ||
| J4_2AZX_003 | 1/D/507:510, 1/D/525:527, 1/D/543:549, 1/D/565:566 | No text annotation | ||
| J4_2AZX_004 | 1/C/507:510, 1/C/525:527, 1/C/543:549, 1/C/565:566 | No text annotation |
Problematic loops
No problematic loops
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