3J0O Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J0O_007 | GNRA | ||
| HL_3J0O_008 | No text annotation | ||
| HL_3J0O_009 | No text annotation | ||
| HL_3J0O_010 | No text annotation | ||
| HL_3J0O_011 | Pseudoknot geometry | ||
| HL_3J0O_012 | No text annotation | ||
| HL_3J0O_013 | GNRA | ||
| HL_3J0O_017 | tRNA D-loop | ||
| HL_3J0O_018 | tRNA anticodon loop | ||
| HL_3J0O_019 | T-loop with 2 stacked bulged bases | ||
| HL_3J0O_023 | No text annotation | ||
| HL_3J0O_020 | tRNA D-loop | ||
| HL_3J0O_024 | No text annotation | ||
| HL_3J0O_021 | No text annotation | ||
| HL_3J0O_025 | No text annotation | ||
| HL_3J0O_022 | T-loop with 2 stacked bulged bases | ||
| HL_3J0O_014 | No text annotation | ||
| HL_3J0O_015 | tRNA anticodon loop | ||
| HL_3J0O_026 | No text annotation | ||
| HL_3J0O_016 | T-loop with 2 stacked bulged bases | ||
| HL_3J0O_001 | GNRA variation | ||
| HL_3J0O_002 | No text annotation | ||
| HL_3J0O_003 | No text annotation | ||
| HL_3J0O_005 | No text annotation | ||
| HL_3J0O_006 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J0O_017 | Major groove intercalation | ||
| IL_3J0O_018 | Multiple bulged bases | ||
| IL_3J0O_019 | No text annotation | ||
| IL_3J0O_020 | No text annotation | ||
| IL_3J0O_021 | No text annotation | ||
| IL_3J0O_022 | Single stack bend | ||
| IL_3J0O_023 | Single bulged A | ||
| IL_3J0O_024 | Isolated non-canonical cWW pair | ||
| IL_3J0O_025 | Major groove platform | ||
| IL_3J0O_032 | No text annotation | ||
| IL_3J0O_026 | Major groove minor groove platform with extra cWW | ||
| IL_3J0O_027 | Tandem non-canonical cWW pairs | ||
| IL_3J0O_028 | Triple sheared | ||
| IL_3J0O_029 | Single bulged A | ||
| IL_3J0O_033 | Minor groove platform | ||
| IL_3J0O_034 | Isolated non-canonical cWW pair | ||
| IL_3J0O_031 | Isolated non-canonical cWW pair | ||
| IL_3J0O_030 | No text annotation | ||
| IL_3J0O_001 | SSU/LSU pseudoknot | ||
| IL_3J0O_002 | Single bulged U | ||
| IL_3J0O_003 | Single bulged A | ||
| IL_3J0O_004 | Kink-turn related | ||
| IL_3J0O_008 | Isolated non-canonical cWW pair | ||
| IL_3J0O_009 | Isolated non-canonical cWW pair | ||
| IL_3J0O_010 | No text annotation | ||
| IL_3J0O_011 | Tandem non-canonical cWW pairs | ||
| IL_3J0O_012 | Double sheared | ||
| IL_3J0O_013 | Isolated non-canonical cWW pair | ||
| IL_3J0O_014 | Tandem non-canonical cWW pairs | ||
| IL_3J0O_015 | Triple sheared | ||
| IL_3J0O_016 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J0O_002 | No text annotation | ||
| J3_3J0O_001 | No text annotation | ||
| J4_3J0O_001 | tRNA junction | ||
| J4_3J0O_004 | No text annotation | ||
| J4_3J0O_002 | No text annotation | ||
| J4_3J0O_005 | No text annotation | ||
| J4_3J0O_003 | No text annotation |
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