4A3J Summary
- Structure title
- RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP
- Authors
- Cheung, A.C.M., Sainsbury, S., Cramer, P.
- Release date
- 2011-12-07
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
- Chains
- 1 RNA chain from synthetic construct
-
2 DNA chains
- 12 other chains
- Nucleic acid compounds
- Other compounds
- 5'-R(*CP*AP)-3', 5'-D(*GP*TP*AP*GP*AP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3', 5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*TP*CP*BRUP*AP*CP*CP *TP*GP*AP*AP*CP*AP*AP*CP*TP*AP*AP*CP)-3'
- DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2, RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4
Pairwise Interactions
Interactions annotated by FR3D:- 7 base-pairs
- 25 base-stacking
- 0 base-phosphate
- 0 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 4A3J contains:- 0 hairpin loops from 0 motif groups
- 1 internal loop from 0 motif groups
- 0 junction loops from 0 motif groups
3D Redundancy
4A3J has chains which belong to the following equivalence classes in the current representative set:- NR_all_24191.4 (1)
- NR_4.0_24191.4 (1)
- NR_20.0_24191.4 (1)