4NYD Summary
- Structure title
- Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine
- Authors
- Warner, K.D., Homan, P., Weeks, K.M., Smith, A.G., Abell, C., Ferre-D'Amare, A.R.
- Release date
- 2014-06-04
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
- Chains
- 1 RNA chain from Escherichia coli
- 0 other chains
- Nucleic acid compounds
- Other compounds
- thiM TPP riboswitch
Pairwise Interactions
Interactions annotated by FR3D:- 32 base-pairs
- 77 base-stacking
- 1 base-phosphate
- 3 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 4NYD contains:- 2 hairpin loops from 0 motif groups
- 4 internal loops from 0 motif groups
- 1 junction loop from 0 motif groups
3D Redundancy
4NYD has chains which belong to the following equivalence classes in the current representative set:- NR_all_42241.5 (1)
- NR_4.0_42241.5 (1)
- NR_3.5_42241.5 (1)
- NR_3.0_42241.5 (1)
- NR_20.0_42241.5 (1)