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4OQ9 Summary

View in PDB or NAKB
Circular interaction diagram
Structure title
Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints
Authors
Larson, S.B., Day, J.S., McPherson, A.
Release date
2014-09-10
Experimental technique
X-RAY DIFFRACTION
Resolution
1.5 Å
Chains
45 RNA chains from Tobacco virtovirus 1
15 other chains
Nucleic acid compounds
RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*UP*U)-3'), RNA (5'-R(P*UP*U)-3')
Other compounds
Coat protein, Coat protein, Coat protein, Coat protein, Coat protein, Coat protein, Coat protein, Coat protein, Coat protein, Coat protein, Coat protein, Coat protein, Coat protein, Coat protein, Coat protein

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 4OQ9 contains:
  • 1 hairpin loop from 0 motif groups
  • 1 internal loop from 0 motif groups
  • 0 junction loops from 0 motif groups
More

3D Redundancy

4OQ9 has chains which belong to the following equivalence classes in the current representative set:

Similar structures

6D30 6J7Z 3ER9 4NIA 4NIA 4NIA 5KAL 24BW 4NIA 5KAL 4NIA 4NIA 5NEW 4NIA 4NIA 4NIA 4NIA 4NIA 4NIA 4NIA 4NIA 4NIA 4OQ8 2VRT 2VRT 1DDL 9FIA
Structures from NR_all_21736.10
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