RNA 3D Hub //

4Z8C Summary

View in PDB or NAKB
Circular diagram PDF
Structure title
Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin
Authors
Release date
2015-05-20
Experimental technique
X-RAY DIFFRACTION
Resolution
2.9 Å
Chains
10 RNA chains from Thermus thermophilus, Escherichia virus T4, Escherichia coli
100 other chains
Nucleic acid compounds
23S ribosomal RNA, 5S ribosomal RNA, 16S ribosomal RNA, mRNA, Initiator Methionine tRNA, 23S ribosomal RNA, 5S ribosomal RNA, 16S ribosomal RNA, mRNA, Initiator Methionine tRNA
Other compounds
50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14 type Z, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein Thx, Oncocin, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14 type Z, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein Thx, Oncocin

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 4Z8C contains:
  • 217 hairpin loops from 0 motif groups
  • 368 internal loops from 0 motif groups
  • 129 junction loops from 0 motif groups
More

3D Redundancy

4Z8C has chains which belong to the following equivalence classes in the current representative set:

Similar structures

9DFE 9DFC 9D0J 9DFE 9DFD 8VTW 8VTW 9DFC 9D7R 9D0J 7RQB 9D7T 9DFD 8FC6 7RQB 9D7S 8FC6 4Y4O 8FC5 8FC5 8FC2 4Y4O 8FC2 8FC3 8VTY 8G2C 8VTU 8UD7 5FDU 5FDV 8FC3 5HCQ 4V9H 8FC1 8G2A 9D7R 5HCQ 8FC1 8VTY 8VTU 4V8I 8UD7 5FDV 5FDU 8G2C 8UD8 7U2J 8VTX 8G2A 7RQE 8G29 9D7T 4WPO 8VTV 8T8B 5IBB 8EKB 5IB7 8G2B 8UD6 6CAE 4WZD 7RQE 5E81 6CFL 6XHX 8UVS 4V8I 9D7S 7U2H 6XHX 4WQR 4WQ1 8T8B 7U2J 7RQ8 6CFL 5IBB 8UVR 4WZD 8T8C 6CAE 8UD8 5DFE 4WSM 8VTX 8G29 4WQ1 8EKB 7U2H 8VTV 4V95 8UD6 5E81 8EV7 8G2B 5IB7 8FC4 5DFE 4WQR 7RQ8 4WSM 6CFK 7RQC 5HCR 8T8C 5IB8 6XHY 8UVR 4WPO 5EL7 7RQC 5NDK 6CFJ 4WSD 5W4K 6CFK 5J4B 4V6G 6QNR 5HCR 8FC4 4WQU 5IB8 8UVS 5EL7 6OF1 5J4B 4V8D 1VY4 6XHY 8EV7 5EL6 4WSD 5NDK 5J8B 5EL6 5EL4 4V9R 5WIS 5HD1 5J4C 4V6G 8CVK 5J4C 1VY4 6XHW 4LNT 4WQF 6QNQ 7MD7 4V9R 7U2I 4W2G 5HCP 4V95 7RQD 4W2H 7AZO 6QNR 4V8D 5HD1 5HCP 6FKR 5W4K 8EV6 6OF1 4V9S 4W2G 4V8G 6XHV 4V8B 6CFJ 4V8G 4V5F 4V9S 4Z3S 6QNQ 7AZO 4Z3S 6ND5 7RQD 5EL4 4V5J 9B00 4W2H 4W2I 7MD7 4W2I 7U2I 4WT1 8G2D 4V8H 6XHW 4V8H 4V5F 5HAU 6C5L 5HAU 8CVJ 6C5L 4WR6 4WT1 4WT8 4V7M 4LNT 5WIS 8CVK 4WRA 6XHV 6FKR 8EV6 6XQD 5E7K 7RQA 6ND5 4WT8 4W2F 4WR6 8G2D 4W4G 5EL5 4WQU 4WRA 4W4G 4V9B 4W2F 4WQF 6O97 4WU1 4V8B 7RQA 5EL5 1VY7 4Y4P 4Y4P 4WU1 5E7K 4V9B 4WQY 8CVL 4ZER 5WIT 9B00 1VY5 1VY7 1VY5 7RQ9 5V8I 6XQD 5VP2 5DOY 8CVJ 5DOY 4V5J 4ZER 5NDJ 4WZO 4V7J 6O97 8CVL 7JQM 4V7J 7RQ9 5WIT 4V5R 4V5R 6ND6 4L47 1VY6 5VP2 5NDJ 1VY6 4WZO 7JQM 4V8C 4YPB 4V87 7JQL 5V8I 4WQY 4YPB 7AZS 4V8C 4WRO 4V8A 4V5E 4V5E 4V6F 4WRO 4YZV 4V5S 4V5S 4V8F 4V90 6ND6 5VPO 4YZV 7JQL 6GSK 4V8E 4L47 4V8Q 7AZS 6UO1 4TUA 4V51 4V87 4V5P 4V5C 4V5Q 4V7K 4ZSN 4V5D 4TUD 4ZSN 4V51 4V5K 4P6F 4V7K 5F8K 4V8E 4V9A 4V9A 4V5P 4TUD 6UO1 4V83 4V8A 4TUC 4TUA 4W2E 4TUE 4V5Q 6XQE 6GSK 4V9I 4V8F 4LSK 4V6F 4V5C 4V5K 4V83 4TUE 4V7Y 4V5D 7LH5 4V97 4TUC 5F8K 4V7Y 4LT8 4V5L 6XQE 7LH5 4TUB 5VPO 4P6F 4TUB 4V9I 1VVJ 4V9K 4V9K 4V7L 4V7M 4LSK 4LT8 4V9Q 4V97 8WV1 8WV1 5DOX 4V7X 1VVJ 5CZP 6B4V 5CZP 4V84 4V9Q 4V84 5DOX 4V7X 4V67 4L71 4LFZ 6N9E 4V7L 6CZR 6N9F 4V7W 4V7W 6N9E 6N1D 4P70 6B4V 4V67 4XEJ 6N9F 6N1D 4LFZ 4L71 4P70 6UCQ 4XEJ 6CZR 4V9L 4V7P 4V7P 4V9L 6UCQ 4V9M 4V63 4V9M 4V63 4LEL 5D8B 4V7Z 5D8B 4LEL 4V7Z 4V8J 4V8J 4V5G 4V5G 4V4J 4V5A 4V5A 4V4I 4V8O 4V4Z 4V4X 4V4R 4V4Y 4V4S 4V4T 4V4P 6GSJ 6GSJ 5J4D 4V6A 4V8X 5J4D 4V8N 4V8X 4V9N 4V6A 4V8N 4V9N 4V8U 4V8U 4V9J 4V9J 6GSL 6GSL 6BOK 6BOK 6BOH 6BOH 5VPP 5VPP 5J3C 5J3C 6OTR 6OPE 6ORD 6OPE 6OTR 6ORD 6NTA 6NTA 6BZ6 6BZ6 6OJ2 6OJ2 6OF6 6OF6 6NUO 5J30 5J30 6NUO 6GZQ 6OXA 6OXA 6NSH 6NSH 6OXI 6OXI 5UQ8 6BUW 6BUW 8FOM 6NWY 8FOM 6NWY 8FON 8FON 6NDK 6NDK 6BZ7 6BZ8 6BZ8 6BZ7 5OT7 5UQ7 6Q95 6O3M 6O3M 6OSI 5ZLU 6GZZ 6GZZ 6OSI 6GZX 6GZX 4V42 5IMQ 4V68 4V5N 4V5M 5IMR 5A9Z 5AA0
Structures from NR_all_97519.75
Copyright 2025 BGSU RNA group. Page generated in 0.2696 s