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5F9F Summary

View in PDB or NAKB
Circular interaction diagram PDF
Structure title
Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA
Authors
Release date
2016-01-13
Experimental technique
X-RAY DIFFRACTION
Resolution
2.6 Å
Chains
6 RNA chains from synthetic construct
6 other chains
Nucleic acid compounds
RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3'), RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3'), RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3'), RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3'), RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3'), RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3')
Other compounds
Probable ATP-dependent RNA helicase DDX58, Probable ATP-dependent RNA helicase DDX58, Probable ATP-dependent RNA helicase DDX58, Probable ATP-dependent RNA helicase DDX58, Probable ATP-dependent RNA helicase DDX58, Probable ATP-dependent RNA helicase DDX58

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 5F9F contains:
  • 6 hairpin loops from 1 motif group
  • 0 internal loops from 0 motif groups
  • 0 junction loops from 0 motif groups
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3D Redundancy

5F9F has chains which belong to the following equivalence classes in the current representative set:

Similar structures

5F9H 5F98 5F98 5F98 5F98 5F98 5F9H 5F9H 5F98 5F9H 5F9H 5F9H
Structures from NR_all_67726.4
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