5GM6 Summary
- Structure title
- Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution
- Authors
- Release date
- 2016-09-21
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
- Chains
- 5 RNA chains from Saccharomyces cerevisiae
- 41 other chains
- Nucleic acid compounds
- Other compounds
- Saccharomyces cerevisiae strain CDRDR_sf_H chromosome VII sequence, Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence, U2 snRNA, Pre-mRNA, Pre-mRNA
- Pre-mRNA-splicing factor 8, Pre-mRNA-splicing helicase BRR2, Pre-mRNA-splicing factor SNU114, Pre-mRNA-splicing factor RSE1, U2 snRNP component HSH155, Cold sensitive U2 snRNA suppressor 1, Pre-mRNA-splicing factor PRP11, Pre-mRNA-splicing factor RDS3, RDS3 complex subunit 10, Pre-mRNA-splicing factor PRP46, Pre-mRNA-processing protein 45, Pre-mRNA-splicing factor SLT11, Pre-mRNA-splicing factor CWC2, Pre-mRNA-splicing factor CWC15, Pre-mRNA-splicing factor BUD31, Pre-mRNA leakage protein 1, U2 snRNP component IST3, Pre-mRNA-splicing factor CWC26, Pre-mRNA-splicing factor CWC21, Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2, Pre-mRNA-splicing factor CWC22, Pre-mRNA-splicing factor CWC24, Peptidyl-prolyl isomerase CWC27, Pre-mRNA-splicing factor CEF1, Pre-mRNA-splicing factor CLF1, Protein HSH49, Pre-mRNA-splicing factor SYF2, Small nuclear ribonucleoprotein Sm D2, Small nuclear ribonucleoprotein F, Small nuclear ribonucleoprotein E, Small nuclear ribonucleoprotein G, Small nuclear ribonucleoprotein-associated protein B, Small nuclear ribonucleoprotein Sm D3, Small nuclear ribonucleoprotein Sm D1, Pre-mRNA-processing factor 17, Pre-mRNA-processing factor 19, Pre-mRNA-processing factor 19, Pre-mRNA-processing factor 19, Pre-mRNA-processing factor 19, Pre-mRNA-splicing factor SNT309, Pre-mRNA-splicing factor SYF1
Pairwise Interactions
Interactions annotated by FR3D:- 101 base-pairs
- 299 base-stacking
- 1 base-phosphate
- 5 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 5GM6 contains:- 5 hairpin loops from 0 motif groups
- 8 internal loops from 0 motif groups
- 3 junction loops from 0 motif groups
3D Redundancy
5GM6 has chains which belong to the following equivalence classes in the current representative set:- NR_all_38286.5 (1)
- NR_all_73363.2 (1)
- NR_all_63515.1 (1) rep
- NR_4.0_38286.5 (1)
- NR_4.0_73363.2 (1)
- NR_4.0_63515.1 (1) rep
- NR_3.5_38286.5 (1)
- NR_3.5_73363.2 (1) rep
- NR_3.5_63515.1 (1) rep
- NR_20.0_38286.5 (1)
- NR_20.0_73363.2 (1)
- NR_20.0_63515.1 (1) rep