5LZU Summary
- Structure title
- Structure of the mammalian ribosomal termination complex with accommodated eRF1
- Authors
- Release date
- 2016-11-30
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
- Chains
- 7 RNA chains from Oryctolagus cuniculus
- 78 other chains
- Nucleic acid compounds
- Other compounds
- P-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, mRNA (UGA stop codon)
- uL2, uS2, uL3, 40S ribosomal protein S3a, uL4, uS5, 60S ribosomal protein L5, uS3, 60S ribosomal protein L6, 40S ribosomal protein S4, uL30, uS7, eL8, 40S ribosomal protein S6, uL6, eS7, uL16, 40S ribosomal protein S8, uL5, Ribosomal protein S9 (Predicted), eS10, eL13, uS17, eL14, 40S ribosomal protein S12, Ribosomal protein L15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, 60S ribosomal protein L27, eS25, uL15, eS26, eL29, 40S ribosomal protein S27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, 60S ribosomal protein L36, Eukaryotic peptide chain release factor subunit 1, Ribosomal protein L37, eL38, eL39, eL40, 60s ribosomal protein l41, eL42, eL43, eL28, uL10, uL11
Pairwise Interactions
Interactions annotated by FR3D:- 2,080 base-pairs
- 5,775 base-stacking
- 96 base-phosphate
- 118 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 5LZU contains:- 126 hairpin loops from 0 motif groups
- 292 internal loops from 0 motif groups
- 77 junction loops from 0 motif groups
3D Redundancy
5LZU has chains which belong to the following equivalence classes in the current representative set:- NR_all_06650.40 (1)
- NR_all_10255.40 (1)
- NR_all_68467.15 (1)
- NR_all_36843.5 (1)
- NR_all_21280.37 (1)
- NR_4.0_06650.40 (1)
- NR_4.0_10255.40 (1)
- NR_4.0_68467.15 (1)
- NR_4.0_36843.5 (1)
- NR_4.0_21280.37 (1)
- NR_20.0_06650.40 (1)
- NR_20.0_10255.40 (1)
- NR_20.0_68467.15 (1)
- NR_20.0_36843.5 (1)
- NR_20.0_21280.37 (1)