5UD5 Summary
- Structure title
- Crystal structure of the tRNA binding domain of Pyrrolysyl-tRNA synthetase bound to tRNA(Pyl)
- Authors
- Release date
- 2017-10-11
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
- Chains
- 2 RNA chains from Methanosarcina mazei
- 2 other chains
- Nucleic acid compounds
- Other compounds
- RNA (70-MER), RNA (70-MER)
- Pyrrolysine--tRNA ligase, Pyrrolysine--tRNA ligase
Pairwise Interactions
Interactions annotated by FR3D:- 59 base-pairs
- 157 base-stacking
- 2 base-phosphate
- 1 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 5UD5 contains:- 6 hairpin loops from 3 motif groups
- 0 internal loops from 0 motif groups
- 2 junction loops from 0 motif groups
3D Redundancy
5UD5 has chains which belong to the following equivalence classes in the current representative set:- NR_all_93427.4 (2) rep
- NR_4.0_93427.4 (2) rep
- NR_3.5_93427.4 (2) rep
- NR_3.0_93427.4 (2) rep
- NR_20.0_93427.4 (2) rep
- NR_2.5_93427.4 (2) rep