6GSL Summary
- Structure title
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site
- Authors
- Release date
- 2018-07-04
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
- Chains
- 14 RNA chains from Thermus thermophilus, Escherichia coli
- 100 other chains
- Nucleic acid compounds
- Other compounds
- 16S ribosomal RNA, 23S ribosomal RNA, 5S ribosomal RNA, 16S ribosomal RNA, 23S ribosomal RNA, 5S ribosomal RNA, tRNAArg, tRNAArg, tRNAfMet, tRNAfMet, tRNAArg, tRNAArg, mRNA, mRNA
- 50S ribosomal protein L2, 30S ribosomal protein S2, 50S ribosomal protein L13, 50S ribosomal protein L7/L12, 50S ribosomal protein L2, 30S ribosomal protein S10, 30S ribosomal protein Thx, 30S ribosomal protein S2, 30S ribosomal protein Thx, 30S ribosomal protein S10, 50S ribosomal protein L3, 30S ribosomal protein S3, 50S ribosomal protein L14, 50S ribosomal protein L7/L12, 50S ribosomal protein L3, 30S ribosomal protein S11, 30S ribosomal protein S3, 30S ribosomal protein S11, 50S ribosomal protein L4, 30S ribosomal protein S4, 50S ribosomal protein L15, 50S ribosomal protein L10, 50S ribosomal protein L4, 30S ribosomal protein S12, 30S ribosomal protein S4, 30S ribosomal protein S12, 50S ribosomal protein L5, 30S ribosomal protein S5, 50S ribosomal protein L16, 50S ribosomal protein L11, 50S ribosomal protein L5, 30S ribosomal protein S13, 30S ribosomal protein S5, 30S ribosomal protein S13, 50S ribosomal protein L6, 30S ribosomal protein S6, 50S ribosomal protein L17, 50S ribosomal protein L13, 50S ribosomal protein L6, 30S ribosomal protein S14 type Z, 30S ribosomal protein S6, 30S ribosomal protein S14 type Z, 50S ribosomal protein L9, 30S ribosomal protein S7, 50S ribosomal protein L18, 50S ribosomal protein L14, 50S ribosomal protein L9, 30S ribosomal protein S15, 30S ribosomal protein S7, 30S ribosomal protein S15, 50S ribosomal protein L1, 30S ribosomal protein S8, 50S ribosomal protein L19, 50S ribosomal protein L15, 50S ribosomal protein L1, 30S ribosomal protein S16, 30S ribosomal protein S8, 30S ribosomal protein S16, 30S ribosomal protein S9, 50S ribosomal protein L20, 50S ribosomal protein L16, 30S ribosomal protein S17, 30S ribosomal protein S9, 30S ribosomal protein S17, 50S ribosomal protein L21, 50S ribosomal protein L17, 30S ribosomal protein S18, 30S ribosomal protein S18, 50S ribosomal protein L22, 50S ribosomal protein L18, 30S ribosomal protein S19, 30S ribosomal protein S19, 50S ribosomal protein L23, 50S ribosomal protein L19, 30S ribosomal protein S20, 30S ribosomal protein S20, 50S ribosomal protein L24, 50S ribosomal protein L20, 50S ribosomal protein L25, 50S ribosomal protein L21, 50S ribosomal protein L27, 50S ribosomal protein L22, 50S ribosomal protein L28, 50S ribosomal protein L23, 50S ribosomal protein L29, 50S ribosomal protein L24, 50S ribosomal protein L30, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L32, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L34, 50S ribosomal protein L30, 50S ribosomal protein L35, 50S ribosomal protein L31, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35
Pairwise Interactions
Interactions annotated by FR3D:- 3,527 base-pairs
- 9,719 base-stacking
- 213 base-phosphate
- 261 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 6GSL contains:- 245 hairpin loops from 3 motif groups
- 384 internal loops from 0 motif groups
- 140 junction loops from 0 motif groups
3D Redundancy
6GSL has chains which belong to the following equivalence classes in the current representative set:- NR_all_35542.154 (2)
- NR_all_65795.85 (2)
- NR_all_97519.78 (2)
- NR_all_42622.78 (2)
- NR_all_24890.7 (2)
- NR_all_12548.3 (2) rep
- NR_4.0_35542.154 (2)
- NR_4.0_65795.85 (2)
- NR_4.0_97519.78 (2)
- NR_4.0_42622.78 (2)
- NR_4.0_24890.7 (2)
- NR_4.0_12548.3 (2) rep
- NR_3.5_35542.154 (2)
- NR_3.5_65795.85 (2)
- NR_3.5_97519.78 (2)
- NR_3.5_42622.78 (2)
- NR_3.5_24890.7 (2)
- NR_3.5_12548.3 (2) rep
- NR_20.0_35542.154 (2)
- NR_20.0_65795.85 (2)
- NR_20.0_97519.78 (2)
- NR_20.0_42622.78 (2)
- NR_20.0_24890.7 (2)
- NR_20.0_12548.3 (2) rep
Similar structures
9NO7 4LFB 5WNV 4X65 4LF8 4LF7 4DR6 8VTW 5WNT 4LF9 4JI1 4X64 8VTW 4DUY 4LF6 4DR2 7RQB 8FC5 4Y4O 9DFE 4LF4 8FC6 9DFE 9DFC 8FC5 8FC2 8FC6 7DUI 4Y4O 4JI7 4DV6 7RQB 8G2C 5FDV 9D0J 8UD7 8FC1 4X62 9DFC 4DV7 5FDV 8FC2 8G2A 5FDU 5FDU 9DFD 8VTU 4DR3 8VTY 4DR5 8UD7 7DUL 8G2A 9O3K 8FC3 6CAE 4KHP 8T8B 4JI3 5HCQ 4LFC 8VTU 9DFD 8G29 4V9H 5WNU 8G2C 8UD6 5WNP 8FC3 6CFL 8VTY 4JI0 8VTX 5HCQ 8FC1 8VTV 7U2H 7U2J 7RQE 8UVS 4JI6 8T8B 8UD8 8G29 9MTP 8UVR 6XHX 9MTS 9MTT 9D0J 8G2B 6CAE 5IBB 9MTP 4X66 8VTV 4JYA 6CFK 6CFL 6MPF 9MTS 8UD8 5J4B 7RQ8 8VTX 8EKB 5IBB 9MTQ 7U2J 4LFA 8UD6 4WSM 8G2B 4WQ1 7RQE 6XHX 9MTT 6XHY 5DFE 9O3K 8EKB 2UUC 9MTQ 8EV7 5W4K 6CFK 5IB7 4WSM 6OF1 4Z8C 6MPI 6CAQ 9O3H 4DR1 7U2H 6CAP 4WQ1 8T8C 4JI8 9O3J 4Z8C 4WZD 5J4B 8UVR 6CFJ 4DV0 4WQR 7AZO 5J4C 5J8B 5E81 5DFE 6XHY 7AZO 7RQC 4WZD 8UVS 9D7R 9D7R 8FC4 5E81 9D7T 5WIS 5HCR 6OF1 5EL7 4DV3 8EV7 5IB7 7U2I 4DV5 9O3L 4DV4 4WT8 9D7T 8T8C 5EL7 4WQR 6NY6 9MTR 6XHW 2UXC 6FKR 9D7S 4WSD 5IB8 5HCR 5W4K 6ND5 6CFJ 8FC4 7RQC 2UUA 7RQ8 9MTR 4Z3S 5J4C 4WPO 7MD7 5IWA 8EV6 4NXN 6FKR 9D7S 6XHV 5EL6 6QNR 4K0K 4V8I 2VQF 5NDK 1VY4 4JI2 5IB8 4GKJ 5EL6 5HCP 8CVK 4WT8 7RQD 5HD1 6QNR 8G2D 7V2P 5NDK 4GKK 4LNT 4W2I 6MKN 4LF5 4DR4 4V5F 6O97 7U2I 4JI4 4Z3S 5EL4 4W2I 4WPO 5HCP 6XHW 4LNT 5WIS 6XHV 9O3J 5HAU 9B00 4W4G 9O3H 6ND5 9O3I 7RQD 1FJG 2UU9 8EV6 5HAU 4W2G 6QNQ 8CVK 7MD7 4DV1 4DUZ 2VQE 5HD1 5EL4 4V5R 4WSD 4W4G 4V5F 4Y4P 5WNQ 5WNS 4JI5 4V5R 4V7M 5WIT 4DV2 4WT1 6QNQ 8G2D 5DOY 4NXM 8CVJ 4JV5 9O3L 7V2Q 5VP2 4YZV 4V7J 6O97 4W2G 4V7J 4V6G 4V8D 5DOY 4V8I 7RQA 1IBL 4V95 6XQD 7RQA 6XQD 7V2L 4W2H 4W2H 5E7K 5E7K 6DTI 4WRA 4ZER 7JQM 4ZER 4W2F 4V6G 4WRA 7RQ9 4WU1 4WR6 4YZV 4WU1 5WIT 1VY4 8CVL 9B00 4V8D 4V95 6C5L 4Y4P 8CVJ 6C5L 4W2E 4WR6 4WT1 1HNW 4YPB 5EL5 4ZSN 4V5J 6UO1 7RQ9 1VY5 6ND6 5VP2 1XMQ 8CVL 4WQU 4V9S 4YPB 6UO1 4V5J 4ZSN 5V8I 4V9B 4W2F 7JQM 4V9B 9O3I 4V9S 5NDJ 4V5P 4WQF 4V9R 4V7K 4L47 1XNR 4V9R 4L47 5NDJ 4V8B 8WRC 4V5Q 4TUD 6ND6 4V5C 4V7K 4V5L 1VY7 7JQL 4V5P 1HR0 7V2M 4TUA 1IBM 4V7M 1HNZ 4V5S 6CAO 5V8I 4V8B 4WQF 1VY6 5EL5 4TUC 4WZO 4TUD 4V5D 4TUA 7JQL 4WZO 4P6F 1VY5 4TUE 4V8Q 4WRO 4V5K 4WQU 4TUE 6CAR 4DR7 1N32 4V5E 6CAS 4V5Q 6GSK 1VY6 6GSK 3OTO 4P6F 5F8K 4WQY 7V2O 1XNQ 4V5S 4V5D 6GZQ 4V5C 4V51 7AZS 4YY3 1IBK 4V5E 4TUB 4TUC 4TUB 3T1H 5F8K 3T1Y 4V87 1VY7 4V51 4LSK 4V83 4V6F 4WRO 4V8G 4LT8 6XQE 4V87 4LT8 7AZS 4V6F 4WQY 4V8C 6N9F 6N9E 6XQE 2UXB 4LSK 7LH5 4V8H 4V8C 4V97 5CZP 5ZLU 4V9A 6N9F 4YHH 4V97 5CZP 6N9E 5VPO 7V2N 4V9I 4V8H 4KVB 4V9Q 1VVJ 4V8E 5VPO 5WNR 4V8E 4V9K 4V9K 6Q95 4V9I 4V83 7LH5 4OX9 5UQ8 1VVJ 4V7L 1HNX 4V90 2HHH 4V9A 4V8A 4P70 6B4V 6B4V 4V8F 6N1D 4XEJ 4V9Q 4L71 4V8A 4P70 4V67 6N1D 6UCQ 4L71 4LFZ 4XEJ 2UXD 4V7L 4V8F 5DOX 4LFZ 4V7P 4V7P 5LMN 1N33 4V8G 4V8J 4V8J 5DOX 5D8B 6UCQ 4V63 4V67 4V7Y 4V7Y 4LEL 4V9L 4V5K 4V63 4V9L 4V9M 5D8B 1XMO 4LEL 4V9M 5OT7 4V84 4V4J 6GZZ 6GZZ 4V5G 4V5G 4V84 4V7X 4V7W 4V7X 5LMQ 5UQ7 4V7W 5LMT 5LMU 4V4I 5LMO 4V5A 4V7Z 5LMR 4V7Z 4V5A 6GZX 6GZX 2E5L 1N36 5LMS 1N34 5LMP 4V8O 5IMQ 2ZM6 5LMV 2UUB 4V68 4V4R 4V4S 4V4T 4V5M 5IMR 4V4X 4V4Z 4V4Y 4V4P 4B3M 4B3T 4B3R 6GSJ 6GSJ 4B3S 5BR8 5J4D 5J4D 1J5E 4V8X 4AQY 4V6A 4V6A 4V8U 4V8X 4V8U 4V8N 4V9N 4V8N 4V9N 4V9J 4V9J 5A9Z 5AA0 7DUK 7DUH 7DUG 7DUJ 6BOK 6BOK 6BOH 6BOH 5VPP 5VPP 5J3C 6ORD 5J3C 6ORD 6OPE 6OTR 6OTR 6OPE 6NTA 6BZ6 5J30 6NTA 6OJ2 6BZ6 6OJ2 5J30 6OXA 6OF6 6OF6 6NUO 1FKA 6OXA 6NUO 6NSH 6OXI 6NSH 6OXI 6NWY 8FOM 6NWY 8FOM 6BUW 6BUW 8FON 8FON 6NDK 6BZ8 6BZ8 6BZ7 6BZ7 6NDK 6O3M 6O3M 1I94 6OSI 6OSI 1I96 1I95 1JGQ 4V42 1JGO 2F4V 1I97 1JGP 4V5NStructures from NR_all_65795.85