6ZP4 Summary
- Structure title
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2
- Authors
- Release date
- 2020-07-29
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
- Chains
- 2 RNA chains from Homo sapiens
- 52 other chains
- Nucleic acid compounds
- Other compounds
- tRNA, 18S ribosomal RNA
- Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 3 subunit A, Eukaryotic translation initiation factor 3 subunit B, Eukaryotic translation initiation factor 3 subunit C, 40S ribosomal protein S15a, Eukaryotic translation initiation factor 3 subunit E, Eukaryotic translation initiation factor 3 subunit F, Eukaryotic translation initiation factor 1A, X-chromosomal, Eukaryotic translation initiation factor 3 subunit H, Eukaryotic translation initiation factor 3 subunit I, Non-structural protein 1, Eukaryotic translation initiation factor 3 subunit K, Eukaryotic translation initiation factor 3 subunit L, Eukaryotic translation initiation factor 3 subunit M, Eukaryotic translation initiation factor 3 subunit D, Eukaryotic translation initiation factor 2 subunit 1, 40S ribosomal protein S25, 40S ribosomal protein S26, 40S ribosomal protein S27, 40S ribosomal protein S28, 40S ribosomal protein S30, Ubiquitin-40S ribosomal protein S27a, Receptor of activated protein C kinase 1, 60S ribosomal protein L41, Unknown factor, Eukaryotic translation initiation factor 2 subunit 3, Eukaryotic translation initiation factor 1, 40S ribosomal protein SA, 40S ribosomal protein S3, 40S ribosomal protein S9, 40S ribosomal protein S2, 40S ribosomal protein S5, 40S ribosomal protein S16, 40S ribosomal protein S20, 40S ribosomal protein S14, 40S ribosomal protein S23, 40S ribosomal protein S18, 40S ribosomal protein S29, 40S ribosomal protein S13, 40S ribosomal protein S11, 40S ribosomal protein S15, 40S ribosomal protein S3a, 40S ribosomal protein S4, X isoform, 40S ribosomal protein S6, 40S ribosomal protein S7, 40S ribosomal protein S8, 40S ribosomal protein S10, 40S ribosomal protein S12, 40S ribosomal protein S17, 40S ribosomal protein S19, 40S ribosomal protein S21, 40S ribosomal protein S24
Pairwise Interactions
Interactions annotated by FR3D:- 642 base-pairs
- 1,792 base-stacking
- 85 base-phosphate
- 94 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 6ZP4 contains:- 38 hairpin loops from 0 motif groups
- 94 internal loops from 0 motif groups
- 19 junction loops from 0 motif groups
3D Redundancy
6ZP4 has chains which belong to the following equivalence classes in the current representative set:- NR_all_83098.6 (1)
- NR_all_46995.54 (1)
- NR_4.0_83098.6 (1)
- NR_4.0_46995.54 (1)
- NR_3.5_83098.6 (1)
- NR_3.5_46995.54 (1)
- NR_3.0_83098.6 (1)
- NR_3.0_46995.54 (1)
- NR_20.0_83098.6 (1)
- NR_20.0_46995.54 (1)