6ZP4 Summary
- Structure title
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2
- Authors
- Release date
- 2020-07-29
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
- Chains
- 2 RNA chains from Homo sapiens
- 52 other chains
- Nucleic acid compounds
- Other compounds
- tRNA, 18S ribosomal RNA
- Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 3 subunit A, Eukaryotic translation initiation factor 3 subunit B, Eukaryotic translation initiation factor 3 subunit C, 40S ribosomal protein S15a, Eukaryotic translation initiation factor 3 subunit E, Eukaryotic translation initiation factor 3 subunit F, Eukaryotic translation initiation factor 1A, X-chromosomal, Eukaryotic translation initiation factor 3 subunit H, Eukaryotic translation initiation factor 3 subunit I, Non-structural protein 1, Eukaryotic translation initiation factor 3 subunit K, Eukaryotic translation initiation factor 3 subunit L, Eukaryotic translation initiation factor 3 subunit M, Eukaryotic translation initiation factor 3 subunit D, Eukaryotic translation initiation factor 2 subunit 1, 40S ribosomal protein S25, 40S ribosomal protein S26, 40S ribosomal protein S27, 40S ribosomal protein S28, 40S ribosomal protein S30, Ubiquitin-40S ribosomal protein S27a, Receptor of activated protein C kinase 1, 60S ribosomal protein L41, Unknown factor, Eukaryotic translation initiation factor 2 subunit 3, Eukaryotic translation initiation factor 1, 40S ribosomal protein SA, 40S ribosomal protein S3, 40S ribosomal protein S9, 40S ribosomal protein S2, 40S ribosomal protein S5, 40S ribosomal protein S16, 40S ribosomal protein S20, 40S ribosomal protein S14, 40S ribosomal protein S23, 40S ribosomal protein S18, 40S ribosomal protein S29, 40S ribosomal protein S13, 40S ribosomal protein S11, 40S ribosomal protein S15, 40S ribosomal protein S3a, 40S ribosomal protein S4, X isoform, 40S ribosomal protein S6, 40S ribosomal protein S7, 40S ribosomal protein S8, 40S ribosomal protein S10, 40S ribosomal protein S12, 40S ribosomal protein S17, 40S ribosomal protein S19, 40S ribosomal protein S21, 40S ribosomal protein S24
Pairwise Interactions
Interactions annotated by FR3D:- 642 base-pairs
- 1,792 base-stacking
- 169 base-phosphate
- 187 base-ribose
- 80 oxygen stacking
- 64 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 6ZP4 contains:- 38 hairpin loops from 0 motif groups
- 94 internal loops from 0 motif groups
- 19 junction loops from 0 motif groups
3D Redundancy
6ZP4 has chains which belong to the following equivalence classes in the current representative set:- NR_all_46995.66 (1)
- NR_all_83098.13 (1)
- NR_4.0_46995.66 (1)
- NR_4.0_83098.13 (1)
- NR_3.5_46995.66 (1)
- NR_3.5_83098.13 (1)
- NR_3.0_46995.66 (1)
- NR_3.0_83098.13 (1)
- NR_20.0_46995.66 (1)
- NR_20.0_83098.13 (1)
Similar structures
8XSX 8PPL 9YPZ 9YQ1 9YQ0 9YPY 9SPF 8K2C 9SPI 7QVP 8PJ5 9YPW 9I14 9KRP 7A09 8PJ6 9YPO 6Y57 8XSZ 9KN6 9YPG 9YPS 9YPT 8PJ4 9RU9 9YPV 9RUA 8PJ1 9M0P 4UG0 9YPZ 8PJ2 9YQ1 9YQ0 9RU8 7TQL 9YPY 8PJ3 9YPV 5T2C 9YPS 9YPW 9YPO 9YPT 8XSZ 9YPG 8XSY 6FEC 4V6X 4KZZ 6QZPStructures from NR_all_83098.13