7B5K Summary
- Structure title
- E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
- Authors
- Albers, S., Beckert, B., Matthies, M., Schuster, R., Riedner, M., Seuring, C., Sanyal, S., Torda, A., Wilson, N.D., Ignatova, Z.
- Release date
- 2021-05-26
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
- Chains
- 7 RNA chains from Escherichia coli K-12
- 50 other chains
- Nucleic acid compounds
- Other compounds
- mRNA, E-site val tRNA (76-MER), 23S rRNA, 5S rRNA, 16S rRNA, P-site Isoleucine tRNA (77-MER), atRNA synthetic Stop tRNA (76-MER)
- 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 50S ribosomal protein L31, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein S21, ermC Nacent chain
Pairwise Interactions
Interactions annotated by FR3D:- 2,027 base-pairs
- 4,997 base-stacking
- 95 base-phosphate
- 129 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 7B5K contains:- 120 hairpin loops from 0 motif groups
- 198 internal loops from 0 motif groups
- 68 junction loops from 0 motif groups
3D Redundancy
7B5K has chains which belong to the following equivalence classes in the current representative set:- NR_all_49241.3 (1) rep
- NR_all_56726.148 (1)
- NR_all_10157.159 (1)
- NR_all_83717.161 (1)
- NR_all_69813.18 (1)
- NR_all_20230.1 (1) rep
- NR_4.0_49241.3 (1) rep
- NR_4.0_56726.148 (1)
- NR_4.0_10157.159 (1)
- NR_4.0_83717.161 (1)
- NR_4.0_69813.18 (1)
- NR_4.0_20230.1 (1) rep
- NR_3.5_49241.3 (1) rep
- NR_3.5_56726.148 (1)
- NR_3.5_10157.159 (1)
- NR_3.5_83717.161 (1)
- NR_3.5_69813.18 (1)
- NR_3.5_20230.1 (1) rep
- NR_3.0_49241.3 (1) rep
- NR_3.0_56726.148 (1)
- NR_3.0_10157.159 (1)
- NR_3.0_83717.161 (1)
- NR_3.0_69813.18 (1)
- NR_3.0_20230.1 (1) rep
- NR_20.0_49241.3 (1) rep
- NR_20.0_56726.148 (1)
- NR_20.0_10157.159 (1)
- NR_20.0_83717.161 (1)
- NR_20.0_69813.18 (1)
- NR_20.0_20230.1 (1) rep
Similar structures
7EQJ 7EQJ 9B51 9B4Z 6OF1 6CAE 5IBB 8URM 9NL5 6O97 6OF1 6OF1 6CAE 9B4Z 6O97 6CAE 6CAE 6ND6 6OF1 5IBB 6BY1 6ND6 6O97 6BY1 6O97 6BY1 6BY1 6ND6 7K00 9B51 5IBB 6ND6 6N1D 9NJF 6N1D 6BY1 4V7A 4V75 4V6Z 4V72 4V6Y 4V73 4V79 4V74 4V77 4V70 4V76 4V78 4V71 8PEG 8PVA 8R3V 8RCL 8RCM 8RCS 8RCT 2K4CStructures from NR_all_69813.18