7ZOD Summary
- Structure title
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia
- Authors
- Mitropoulou, A., Plessa, E., Wlodarski, T., Ahn, M., Sidhu, H., Becker, T.A., Beckmann, R., Cabrita, L.D., Christodoulou, J.
- Release date
- 2022-08-10
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
- Chains
- 3 RNA chains from Escherichia coli
- 28 other chains
- Nucleic acid compounds
- Other compounds
- 5S rRNA, 23S rRNA, Pro-tRNA
- 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27
Pairwise Interactions
Interactions annotated by FR3D:- 1,266 base-pairs
- 3,209 base-stacking
- 76 base-phosphate
- 88 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 7ZOD contains:- 78 hairpin loops from 0 motif groups
- 114 internal loops from 0 motif groups
- 43 junction loops from 0 motif groups
3D Redundancy
7ZOD has chains which belong to the following equivalence classes in the current representative set:- NR_all_10157.154 (1)
- NR_all_83717.156 (1)
- NR_all_56101.6 (1)
- NR_4.0_10157.154 (1)
- NR_4.0_83717.156 (1)
- NR_4.0_56101.6 (1)
- NR_3.5_10157.154 (1)
- NR_3.5_83717.156 (1)
- NR_3.5_56101.6 (1)
- NR_3.0_10157.154 (1)
- NR_3.0_83717.156 (1)
- NR_3.0_56101.6 (1)
- NR_20.0_10157.154 (1)
- NR_20.0_83717.156 (1)
- NR_20.0_56101.6 (1)
Similar structures
5J7L 5JC9 5J8A 4YBB 6I7V 4WOI 5IT8 5J91 4U27 5J88 4WF1 4WOI 4V9D 4V9P 4V9P 4U24 4V9O 4WWW 4U26 4V9P 4V7T 4V9O 4V6C 4U25 4V9O 4V9P 4U1U 6LKQ 4V7U 4U20 4V7V 4V9C 4U1V 4V52 5J7L 4V52 4V7S 5J8A 4V9D 4V50 5JC9 4V85 6BY1 6I7V 4V57 4V64 4V64 4V57 4V6D 4V54 4V54 4V53 4V53 4V6E 4V9O 4U27 4V56 4V55 4WF1 5J88 4U25 6BY1 4V4Q 4U1V 4V55 4V50 4V56 4V89 4V4Q 4YBB 4U26 4U1U 4V9C 4V7T 4U20 5IT8 4U24 4WWW 5J91 4V6C 4V5Y 4V6D 4V7V 4V5Y 4V7S 4V7U 4V6E 4V5B 4V5B 5J5B 4V4H 4V4H 5J5B 9Q87 8B0X 8CEU 8FTO 9GHE 9D89 8AYE 7K00 8CGD 8QOA 8BIL 8G6W 8BIM 8E30 8G6Y 8E3O 8EMM 8ANA 8BGE 8E49 6XZ7 7QQ3 9N2B 8E43 8BHL 8R6C 9GHB 8E41 8QBT 7ZP8 8EIU 9GHA 8YUO 8E33 7LVK 6PJ6 8BF7 7N1P 8AKN 8G6X 7PJS 8HSP 7Z20 7Y7G 8BHP 7O1A 9N2C 8E3M 8E45 7S1H 8E32 8YUP 8R8M 9FBV 8HTZ 9GHF 8E46 8RPZ 8RQ2 8RQ0 8E3L 7Y7E 8YUQ 9GHD 8E48 8IFB 7Y7F 8YUS 8E42 8E35 7S1K 8YUR 7BL4 8E47 7N2U 7S1J 8W51 7N2V 7Y7H 7Y7C 7S1G 7S1I 7SA4 8E36 7UG7 7YLA 6XZB 6YSS 7Y7D 6PC6 9H0L 8BH4 8E44 9CG5 8J1Z 6PCR 6PC7 9CG6 6YS3 7O1C 9MOR 7N30 7NWT 9AX7 9AX8 7N31 9GXX 7ZTA 6TBV 6TC3 8EKC 6XZA 8RPY 7N2C 8HU1 6PCQ 7ZQ5 9MQ4 9CG7 8ZEJ 6PC5 7M5D 8G7R 8P16 8P18 8QK7 8BHJ 8P17 7ZQ6 9GHC 8AM9 8BGH 6QDW 7NSO 7ST2 7OT5 8SYL 7B5K 8G7P 8FZH 7OTC 6Y69 8BHN 5AFI 7O19 6ORE 7P3K 7OIZ 8IFC 8ZTV 8ZTU 6PCT 6WYV 7TOS 6U48 5NWY 5MDV 6ZTP 6ZU1 6ZTO 7OII 7OIF 8FZE 8FZJ 7ST6 6WDE 6PCS 5H5U 8ZFI 6WD0 6HRM 8AP4 6PC8 6H4N 7Q4K 7NWW 8B7Y 6QUL 7AC7 6SZS 6PCH 8PKL 5WFS 7NSQ 7PJV 5MDZ 8FZI 6S0K 8G7S 8URY 8FZD 6YSR 8FZG 6X7K 8G7Q 7PJY 6OM6 8G2U 7NBU 6ENU 5MDW 8Q4F 9H3Z 9GFT 9GFT 5MGP 6VWL 7OIG 8UQL 6X6T 7ST7 8FZF 6YST 7K53 7SSO 7LV0 7SSN 7K54 7ACJ 9GR1 6ENF 6WDD 5U9G 5U9F 9HA6 5UYM 9NLF 6C4I 9GGR 9GGR 9NJV 7ABZ 5WDT 8R3V 9NLH 8PEG 7JT1 6WDF 6WDG 7SSD 7K55 7CPJ 8G34 8G38 6OG7 6WD1 7BV8 9NL6 5WE4 7BL5 9NL5 8C8Y 6OFX 8T5D 8G31 9H3Y 8UR0 7K50 7K52 8T5H 9NLJ 8A3L 3JBV 9NLE 5GAE 9NLQ 9NLS 6I0Y 7QGN 7ACR 5MDY 5WFK 5LZD 6OGI 9NL7 9NLB 3JCE 6ZTM 8RCL 5O2R 6ZTJ 7NSP 6X7F 7K51 7JT2 5LZE 6BU8 7OJ0 7D6Z 6VWM 6OSQ 8C90 6VWN 8RCM 5U4I 6ORL 5KCR 5LZA 6WD5 6WD3 5UYL 8C8Z 5WE6 6WDK 5IQR 5WF0 6WD2 6WDM 7BL3 6VYS 6XDQ 6ENJ 7JSS 6YSU 6WD9 7JSZ 7JT3 8PHJ 3JBU 9NKL 5L3P 5GAD 6WDJ 6WD6 6OSK 3J9Z 6Q9A 6DNC 6WD8 6WD4 6WDL 5JU8 5JTE 3JCJ 8CGV 8UQP 5UYQ 7JSW 6WDA 7SSW 7SSL 5GAH 8VSA 9H3V 6GWT 6GXM 6ZTL 6GBZ 6OUO 6GC8 5GAG 5UYP 7SS9 6GC0 7BL2 3J9Y 5KPW 5UYK 6OGF 5KPX 6GXO 6GXN 6WD7 3JCD 8FIZ 5KPS 5KCS 7PJW 5UYN 6OT3 6Q97 6WDI 4UY8 7QG8 5NP6 6WDB 6O9J 8VS9 6O9K 9NJF 8C8X 3J7Z 8C94 7D80 7BL6 5KPV 6OGG 3JA1 7UPH 6WDC 6ZTN 9H3Q 9H3X 5GAF 8CGK 9H3S 6WDH 6GC4 6OST 8RCS 6Q98 9H3R 6GXP 8PVA 7QGH 9HA4 9HA7 5LZF 3JCN 6XDR 8CAM 6X9Q 5LZC 5NCO 6XGF 8C95 8UQM 8URI 8RCT 5LZB 9H3W 8URH 7QGR 4CSU 5AKA 7PJZ 7PJT 3J8G 4V5H 7PJX 8URX 4V69 5ADY 6XII 4V7B 4V6M 3J5L 9H3P 4V7D 4V7C 6H58 6H58 5ZZM 4V6K 6VZ5 4V6T 4V7A 4V65 4V66 2RDO 7PJU 2J28 4V6V 6VYZ 6VZ2 3BBX 4V6Q 4V6R 4V48 4V6Z 4V6Y 4V75 4V6N 4V7I 4V47 4V72 4V6S 4V6L 4V6P 4V6O 4V73 4V79 4V4W 4V4V 4V70 4V77 4V76 4V74 4V78 4V71Structures from NR_all_10157.154