7ZOD Summary
- Structure title
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia
- Authors
- Mitropoulou, A., Plessa, E., Wlodarski, T., Ahn, M., Sidhu, H., Becker, T.A., Beckmann, R., Cabrita, L.D., Christodoulou, J.
- Release date
- 2022-08-10
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
- Chains
- 3 RNA chains from Escherichia coli
- 28 other chains
- Nucleic acid compounds
- Other compounds
- 5S rRNA, 23S rRNA, Pro-tRNA
- 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27
Pairwise Interactions
Interactions annotated by FR3D:- 1,266 base-pairs
- 3,209 base-stacking
- 76 base-phosphate
- 88 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 7ZOD contains:- 78 hairpin loops from 0 motif groups
- 114 internal loops from 0 motif groups
- 43 junction loops from 0 motif groups
3D Redundancy
7ZOD has chains which belong to the following equivalence classes in the current representative set:- NR_all_10157.158 (1)
- NR_all_83717.160 (1)
- NR_all_56101.7 (1)
- NR_4.0_10157.158 (1)
- NR_4.0_83717.160 (1)
- NR_4.0_56101.7 (1)
- NR_3.5_10157.158 (1)
- NR_3.5_83717.160 (1)
- NR_3.5_56101.7 (1)
- NR_3.0_10157.158 (1)
- NR_3.0_83717.160 (1)
- NR_3.0_56101.7 (1)
- NR_20.0_10157.158 (1)
- NR_20.0_83717.160 (1)
- NR_20.0_56101.7 (1)
Similar structures
8B0X 9Q87 9GHE 8BIL 8BIM 7K00 8CGD 9GHB 8BGE 8G6Y 9GHA 9GHD 8BHL 8FTO 9GHF 8BHP 9D89 8E30 8BF7 9N2B 7N1P 9N2C 8W51 7Z20 8HSP 8E49 8EMM 7N2V 7LVK 7S1I 8G6W 7N2U 8YUP 5J7L 7S1H 8HTZ 8YUQ 7S1G 8G6X 8IFB 8YUS 7UG7 9H0L 7YLA 5J8A 9CG6 9AX8 9CG5 8E46 8E42 8EKC 8E3O 5JC9 8RQ2 8RPZ 8RQ0 8E41 9GXX 7N2C 7ZTA 8E44 6YS3 8CGV 7ZP8 8BH4 9AX7 5MDV 4YBB 8ZEJ 8E45 8G7P 7P3K 8ZTU 8CEU 8YUR 8HU1 6PCR 8G7R 8CGK 8SYL 8YUO 7OIZ 8FZH 8E43 8CAM 7N31 5H5U 8E3M 9GHC 8ZTV 8EIU 5NWY 7ST2 8E33 7Y7G 9CG7 7S1K 8FZJ 8BGH 8RPY 8FZE 5MDZ 6QDW 6ORE 6I7V 5J91 6PC5 5IT8 8J1Z 8PHJ 8ZFI 8BHN 7Y7F 6PJ6 7Q4K 8BHJ 9IOT 7Y7E 6PCT 8G7Q 8IFC 5WFS 5J88 6PC7 8G7S 8FZD 6S0K 4WOI 7ST6 6SZS 8FZI 8E48 4WF1 4WOI 4U27 8FZG 7Y7H 7D6Z 6PC6 6WD0 6XZB 5WDT 6PCS 6LKQ 4V9P 7BL4 5WE4 7M5D 6XZA 9NLH 9NL5 8VWQ 8E36 4V9P 4V9O 4V9P 6PCQ 8URM 4V9O 8FZF 4U24 4WWW 6PC8 4U26 6WDE 5J7L 7N30 4V7T 4V6C 8W2N 4V9P 4V9D 4U1U 7K53 8E32 7Y7C 9MKK 4V9O 7NSO 7SSO 7NBU 7OTC 5J8A 9NLF 4U25 7OJ0 7SSN 5UYM 9NL6 6ENU 5JC9 5MGP 9MQ4 7NSQ 7K54 6PCH 4V7U 7K55 9NLQ 4U20 9GFT 7SSD 6H4N 4V52 5WE6 9NL7 5GAE 7ST7 4V52 7BV8 5U9G 5WF0 7ZQ5 7LV0 7K50 7K52 9HA6 8UXB 8VKV 6WDD 6Y69 6WDG 8E47 4V7V 5U9F 9NLS 5WFK 4V9C 7ZQ6 4V50 4U1V 7JT1 6Q9A 7CPJ 5LZD 4V57 4V57 8UZ3 8VUP 6I7V 6WD1 6WDF 4V54 9NLE 5GAD 5IQR 4V64 4V64 7Y7D 5LZE 6BY1 6OG7 4V85 4V54 4V7S 5GAG 9H3Z 6OFX 5GAH 8UQL 7K51 5J88 7B5K 8URY 6BU8 4V53 5UYL 8E3L 8UTJ 8FIZ 8UX8 9GGR 7JT2 9NLJ 4V53 6WD2 9NJV 5NP6 6OGI 6WDM 6WD5 6WD3 8UZG 4YBB 6ORL 5KPW 4WF1 4V6D 6QUL 5KPX 4V56 6OM6 6WD4 9NLB 6WDK 6WD6 4V9D 8E35 4V55 5KPS 6BY1 6WDL 4V50 6WD9 8Q4F 6WDJ 5IT8 4V4Q 4V9O 7JSZ 6ENF 4V56 8VSA 5O2R 5UYK 6OT3 7SSW 4V55 6WD8 7D80 5J91 6WDA 6OSK 5UYQ 9NKL 8T5D 4U25 4V89 4V6E 4U1U 5UYP 5KPV 7JSW 4V4Q 4U27 6OGF 4U1V 6OSQ 7JT3 3JBV 6WYV 6VWL 6WD7 6GBZ 5KCR 8V03 7SSL 6VWM 3JBU 4U26 5UYN 3JCJ 6VWN 3J9Z 6I0Y 9NJF 8VS9 7JSS 9H3Y 4V7T 7SS9 4V6C 8Y5L 7BL6 6OST 4U24 4U20 6GC0 6GWT 6GC8 8VV4 4V5Y 7NSP 6WDI 9GFT 6WDH 6GXM 6DNC 4WWW 6O9J 6C4I 6GXO 6GXN 6OUO 6VYS 8C90 6WDB 7BL5 6WDC 6ENJ 8Y5Q 9H3Q 6XDQ 4V5Y 8UQP 8T5H 6OGG 8VOR 9GGR 8Y5T 9H3S 7UPH 8Y5R 4V6D 3JA1 8G38 9H3V 4V7S 8Y5O 4V9C 8Y5S 5LZF 7QG8 3J9Y 6O9K 6U48 8Y5M 5LZC 5NCO 9H3R 6X7K 8C8X 8Y5N 7QGN 4V6E 9HA7 4V7V 8C8Z 9HA4 5JU8 8C94 4V7U 5GAF 5KCS 8VOS 6GXP 3JCN 6X7F 9H3X 6GC4 8VOO 8UQM 8URI 7QGH 6XGF 5LZB 8C8Y 8C95 8VL1 8URH 8G2U 6X9Q 8UR0 4CSU 7BL3 9MOR 3J7Z 8VOP 6XDR 8G34 9H3W 5JTE 7BL2 8URX 8Y5P 4V5H 8G31 4V5B 4V5B 4V6M 4V69 6X6T 8Y5K 4UY8 5U4I 5AKA 3JCD 4V7D 5L3P 4V7C 4V7B 3J8G 3JCE 4V6K 7QGR 5ADY 6XII 6H58 5ZZM 9H3P 6H58 3J5L 4V6T 4V6V 2J28 2RDO 8VOQ 6VZ2 3BBX 4V6Q 4V6R 6VZ5 4V6N 6VYZ 4V7A 4V6L 4V7I 4V6S 4V6P 4V66 4V65 4V75 4V72 4V6Z 4V6Y 4V6O 5J5B 4V79 4V73 4V4H 4V4H 4V70 4V74 4V77 5J5B 4V76 4V4V 4V78 4V71 4V4W 5MDY 7TOS 6Q98 6Q97 8AYE 8QOA 8ANA 7QQ3 6XZ7 8R6C 8QBT 8AKN 7PJS 7O1A 8R8M 9FBV 7S1J 7SA4 6YSS 7NWT 7O1C 6TBV 6TC3 8P16 8P18 8QK7 8P17 8AM9 7OT5 5AFI 7O19 6ZU1 6ZTO 6ZTP 7OII 7OIF 8AP4 8B7Y 7NWW 6HRM 7AC7 8PKL 7PJV 6YSR 7PJY 5MDW 9GR1 7OIG 6YST 7ACJ 7ABZ 8R3V 8PEG 8A3L 7ACR 8RCL 6ZTJ 8RCM 5LZA 6ZTM 6YSU 7PJW 6ZTL 8RCS 6ZTN 8PVA 8RCT 7PJZ 7PJT 7PJX 7PJU 4V48 4V47Structures from NR_all_10157.158