8G6Y Summary
- Structure title
- Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
- Authors
- Majumdar, C., Cate, J.H.D.
- Release date
- 2023-04-05
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
- Chains
- 5 RNA chains from Escherichia coli
- 29 other chains
- Nucleic acid compounds
- Other compounds
- mRNA, A-site tRNA Phe, P-site tRNA fMet, 23S rRNA, 5S rRNA
- 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 50S ribosomal protein L31, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, Ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L32
Pairwise Interactions
Interactions annotated by FR3D:- 1,350 base-pairs
- 3,265 base-stacking
- 83 base-phosphate
- 97 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8G6Y contains:- 76 hairpin loops from 0 motif groups
- 118 internal loops from 0 motif groups
- 42 junction loops from 0 motif groups
3D Redundancy
8G6Y has chains which belong to the following equivalence classes in the current representative set:- NR_all_35542.154 (1)
- NR_all_19951.93 (1)
- NR_all_10157.158 (1)
- NR_all_83717.160 (1)
- NR_4.0_35542.154 (1)
- NR_4.0_19951.93 (1)
- NR_4.0_10157.158 (1)
- NR_4.0_83717.160 (1)
- NR_3.5_35542.154 (1)
- NR_3.5_19951.93 (1)
- NR_3.5_10157.158 (1)
- NR_3.5_83717.160 (1)
- NR_3.0_35542.154 (1)
- NR_3.0_19951.93 (1)
- NR_3.0_10157.158 (1)
- NR_3.0_83717.160 (1)
- NR_20.0_35542.154 (1)
- NR_20.0_19951.93 (1)
- NR_20.0_10157.158 (1)
- NR_20.0_83717.160 (1)
- NR_2.5_35542.154 (1)
- NR_2.5_19951.93 (1)
- NR_2.5_10157.158 (1)
- NR_2.5_83717.160 (1)
Similar structures
4YCO 4YCO 4YCO 7S1I 8EKC 8G5Z 8FZH 7S1G 7N1P 8FZE 7S1K 9D7R 9DFC 9D7T 9D7S 9DFD 8FZD 3FOZ 9D7R 8QFS 4WOI 9D7T 9DFC 8VTU 9D7S 5NDK 8UD7 9DFD 3L0U 7UG7 8G2C 8SYL 7AZO 7AZO 6QNR 8FZG 8G2C 8UD7 8UD8 4V9H 8UD8 8UVR 8G2B 8G2A 4V5R 8VTV 4WQF 9D0J 8VTU 8UD6 4V5R 7N2C 8UD6 8G29 5J4B 4V5P 6QNR 6CFJ 8UD7 4V5P 8G2B 5NDJ 6XHY 8UD8 8UD8 9D0J 5NDK 7RQ8 8G2B 4WQU 8VTX 5W4K 8VTX 4W2E 8G29 4V6F 6CFJ 2ZM5 8UD7 5J4C 2ZXU 5WIT 8G2A 8EV7 8EV7 6CFJ 5NDJ 5WIS 5J4C 6XHW 7N2U 4V9D 8CVK 5J4B 5WIS 6XHY 4V5J 8UVR 8UD6 8VTV 6C5L 9D7R 9D7S 8G2B 5W4K 5J4B 6CFJ 8UVR 6XHV 5J4C 5WDT 9GFT 5UYM 4WT1 7AZS 4WQU 4V5S 5J4B 9GGR 5VP2 7RQ8 5J4C 5VP2 7AZS 8CVJ 4V5E 8UVS 8G2D 8IFB 8UD6 6XHW 4V5E 4V5Q 8FZE 9D0J 6ND5 6C5L 6WDE 4V5D 8CVK 8UVR 7AZO 7RQ9 6XHV 6Y3G 8EV7 4V5S 9D0J 5WIT 4W2G 4WQF 9O3L 7RQ8 5WIS 4V5D 8G2D 5W4K 5NDK 4V5J 8EV6 7AZO 4V5Q 8CVL 9D7T 8FZH 9O3L 8UVS 5DOY 4WOI 5W4K 4WT1 4Y4P 4Z3S 8CVJ 9O3L 7RQ9 1VY7 7RQ9 8EV7 6ND5 4V6F 5DOY 4Z3S 5NDK 4WSD 8CVL 8G61 8G2D 2ZM5 5DOY 5VP2 9D7R 8EV6 7AZO 8EV6 4Z3S 6ND5 4WPO 5WFS 4Z3S 7RQ9 4WQR 5VP2 4WT1 9O3L 4Y4P 4V51 4Y4P 4WSD 7AZO 8FZJ 4W2I 1VY4 8G2D 4WRO 6UO1 5WIS 5WE4 9DFC 6XHY 4W2I 1VY7 7RQ8 8UVS 9D7S 6UO1 6WDD 6UO1 8FZI 4W2F 6UO1 8G2C 4WQR 4WPO 4W2I 4WSD 5NDJ 4V6F 6WDG 9DFC 8UU5 8EV6 4V5S 4V5L 4WT1 4WQR 6ND5 5WE6 4V5D 4V9C 5NDJ 8G2A 6WDF 9DFD 6QNR 6QNR 9D7T 4Y4P 4V5S 4V5D 4V5E 4W2G 5WIT 6WNW 4V5D 5DOY 8G29 6BU8 8G2C 2ZXU 8VTX 4V5D 9B00 6QNR 6QNR 4V5J 5WIT 4V51 5KPX 6XHY 8G2A 4W2G 6XHV 5NDK 4WPO 9DFD 8VTX 4V5J 4W2I 5KPW 6XHW 1VY4 5NDJ 1VY5 8UVS 8VTV 6WDK 4W2G 4V5Q 4WSD 8G29 4V5Q 8Y5M 4V9D 8IFC 4WZO 6WDM 8VTU 6C5L 8G6X 6WD9 4V5C 6QNR 4W2F 7AZS 4WRO 8CVJ 6WD5 9B00 6XHW 8VTV 6C5L 4V5G 4W2F 8VTU 7AZS 4WZO 8FZF 9B00 7AZO 7AZS 4V5P 4V5G 7AZS 6WD3 6XHV 5NDK 8CVJ 4WRO 4V6F 8UU6 4P6F 8G6W 6WD4 4V5G 6WD2 9B00 6WDL 4V6F 8CVK 5NDJ 8Y5L 4V5P 4WRO 6UCQ 4V5C 8CVK 7AZS 6WDJ 1VY4 5KPV 6WD6 4V5G 4V6F 4V5E 4V5R 8CVL 4V5C 6WD8 5UYL 1VY4 6WDA 6Q95 4W2F 4V5R 4W2H 4P6F 7N30 6VWL 4V5A 4WQR 4V5C 7LH5 1VY5 6O9J 8CVL 8FZD 4V5A 4V4I 4WPO 8Y5T 7LH5 6UCQ 4V97 7QGN 1VY5 8SYL 7N31 6WDB 4W2H 8Y5S 8Y5R 6Y4B 4V9I 4V97 6WDC 4V5L 6VWM 7QG8 8FZG 4WQU 6AZ1 5OT7 4V9I 5UYK 8Y5K 8UU9 6AZ1 1VY5 4V8J 6VWN 4V97 7Q4K 4V97 6WD7 6WDI 8UU8 6UCQ 8Y5O 5WFK 7QGH 8UU7 5IQR 4W2E 8Y5N 4V8J 4V9C 4V7D 4V7C 4WQU 5UQ8 5IQR 5UQ7 4V6K 3JCE 4V6K 3JCD 7QGR 4V69 4WQF 3JCD 5WF0 6UCQ 4V7D 6WDH 4V8J 4V7C 3JCE 4WQF 4V4Y 3JBV 3J46 4V4Y 4V6L 4V6L 4V4Y 8AKN 6ZTN 6YSS 5AFI 6ZTL 7AC7 6YSR 7PJY 7PJV 9GR1 6YST 7ABZ 8PEG 8QHC 8R3V 6YSU 8RCL 8RCM 7PJW 8RCS 8RCT 7PJZ 7PJT 7PJX 7PJUStructures from NR_all_19951.93