RNA 3D Hub //

8PV2 Summary

View in PDB or NAKB
Circular interaction diagram PDF
Structure title
Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
Authors
Thoms, M., Cheng, J., Denk, T., Berninghausen, O., Beckmann, R.
Release date
2023-11-15
Experimental technique
ELECTRON MICROSCOPY
Resolution
2.6 Å
Chains
3 RNA chains from Thermochaetoides thermophila DSM 1495
54 other chains
Nucleic acid compounds
26S rRNA, 5.8S rRNA, 5S rRNA
Other compounds
Ribosome biogenesis protein ERB1, Ribosome biogenesis protein YTM1, Large ribosomal subunit protein uL10, Nucleolar GTP-binding protein 1, Pescadillo homolog, Ribosome biogenesis protein NSA2 homolog, Putative GTP binding protein, 60S ribosomal protein l7-like protein, Eukaryotic translation initiation factor 6, DUF2423 domain-containing protein, Ribosome biogenesis protein RLP24, Zinc finger domain-containing protein, Nucleolar GTP-binding protein 2, Ribosome production factor 2 homolog, Ribosome biogenesis regulatory protein, Ribosome assembly protein 4, rRNA-processing protein, 60S ribosomal protein L2-like protein, 60S ribosomal protein L3-like protein, 60S ribosomal protein L4-like protein, 60S ribosomal protein l5-like protein, 60S ribosomal protein L6, 60S ribosomal protein l7-like protein, 60S ribosomal protein L8, 60S ribosomal protein l9-like protein, Putative ribosomal protein, 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, Ribosomal protein L15, 60S ribosomal protein L16-like protein, 60S ribosomal protein l17-like protein, Ribosomal protein L18-like protein, Ribosomal protein L19, 60S ribosomal protein L20, 60S ribosomal protein l21-like protein, 60S ribosomal protein L22-like protein, 60S ribosomal protein l23-like protein, 60S ribosomal protein L25-like protein, 60S ribosomal protein L26-like protein, 60S ribosomal protein L27, 60S ribosomal protein L28-like protein, 60S ribosomal protein l30-like protein, Putative 60S ribosomal protein, 60S ribosomal protein L32-like protein, 60S ribosomal protein l33-like protein, Ribosomal protein l34-like protein, dolichyl-diphosphooligosaccharide--protein glycotransferase, 60S ribosomal protein L36, Ribosomal protein L37, 60S ribosomal protein L38-like protein, Ribosomal protein eL39, 60S ribosomal protein L43-like protein, Putative 60S ribosomal protein

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 8PV2 contains:
  • 80 hairpin loops from 0 motif groups
  • 153 internal loops from 0 motif groups
  • 42 junction loops from 0 motif groups
More

3D Redundancy

8PV2 has chains which belong to the following equivalence classes in the current representative set:

Similar structures

8PV7 8PVL 9I78 8PV1 9I1W 8PVK 8PV8 8PV4 8PV6 8PV3 8OO0 7Z3N 7Z3O 8ONZ 8PV5 7OLC 7OLD 8IA0 8I9Z 8I9X 8I9Y 8I9W 8I9V 8I9R 8I9T 8I9P
Structures from NR_all_93493.10
Copyright 2025 BGSU RNA group. Page generated in 0.2451 s