RNA 3D Hub //

8V9L Summary

View in PDB or NAKB
Circular interaction diagram PDF
Structure title
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
Authors
Rybak, M.Y., Helena-Bueno, K., Hill, C.H., Melnikov, S.V., Gagnon, M.G.
Release date
2024-02-07
Experimental technique
ELECTRON MICROSCOPY
Resolution
3.0 Å
Chains
5 RNA chains from Mycolicibacterium smegmatis MC2 155
54 other chains
Nucleic acid compounds
23S Ribosomal RNA, 5S Ribosomal RNA, 16S Ribosomal RNA, poly-U mRNA, pe/E deacylated phenylanaline-tRNA
Other compounds
50S ribosomal protein L29, 50S ribosomal protein L30, Large ribosomal subunit protein bL31, 50S ribosomal protein L32, Large ribosomal subunit protein bL33A, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 50S Ribosomal Protein L27, 50S ribosomal protein L2, 50S ribosomal protein L3, Large ribosomal subunit protein uL4, Large ribosomal subunit protein uL5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L10, 50S ribosomal protein L11, Large ribosomal subunit protein uL13, 50S ribosomal protein L14, 50S ribosomal protein L15, Large ribosomal subunit protein uL16, 50S ribosomal protein L17, Large ribosomal subunit protein uL18, 50S ribosomal protein L19, Large ribosomal subunit protein bL20, Large ribosomal subunit protein bL21, Large ribosomal subunit protein uL22, Large ribosomal subunit protein uL23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, Large ribosomal subunit protein bL28, 30S Ribosomal Protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, Small ribosomal subunit protein uS5, 30S ribosomal protein S6, 30S ribosomal protein S7, Small ribosomal subunit protein uS8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, Small ribosomal subunit protein uS14B, Small ribosomal subunit protein uS15, 30S ribosomal protein S16, 30S ribosomal protein S17, Small ribosomal subunit protein bS18B, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S Ribosomal Protein S22, Elongation factor Tu, Ribosome hibernation factor Balon (MSMEG_1130)

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 8V9L contains:
  • 114 hairpin loops from 0 motif groups
  • 200 internal loops from 0 motif groups
  • 69 junction loops from 0 motif groups
More

3D Redundancy

8V9L has chains which belong to the following equivalence classes in the current representative set:

Similar structures

9B1Y 9B24 8FR8 8VR4 8VPK 8WHX 8WHY 8WI8 7S0S 8V9K 8V9J 8VK0 5O60 8VIO 9B1X 8VK7 8KAB 8VRL 5O61 8VKI 9B1W 5ZET 9E0P 8VKW 7XAM 6DZP 8WI7 8WIB 9E0N 6DZI 8VR8 5ZEB 5XYM 5ZEP 9K10 8XZ3 8WIC 7Y41 9K0Z
Structures from NR_all_76090.15
Copyright 2025 BGSU RNA group. Page generated in 0.6787 s