8VPK Summary
- Structure title
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Authors
- Majumdar, S., Koripella, R.K., Sharma, M.R., Manjari, S.R., Banavali, N.K., Agrawal, R.K.
- Release date
- 2025-04-30
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
- Chains
- 2 RNA chains from Mycolicibacterium smegmatis MC2 155
- 33 other chains
- Nucleic acid compounds
- Other compounds
- 23S ribosomal RNA, 5S ribosomal RNA
- 50S ribosomal protein L30, 50S Ribosomal Protein L37, GTPase HflX, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S Ribosomal Protein L4, 50S Ribosomal Protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L10, 50S ribosomal protein L11, 50S Ribosomal Protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, Large ribosomal subunit protein uL16, 50S ribosomal protein L17, 50S Ribosomal Protein L18, 50S ribosomal protein L19, 50S Ribosomal Protein L20, 50S Ribosomal Protein L21, 50S Ribosomal Protein L22, 50S Ribosomal Protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S Ribosomal Protein L28, 50S ribosomal protein L29, 50S ribosomal protein L32, 50S Ribosomal Protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 50S Ribosomal Protein L31
Pairwise Interactions
Interactions annotated by FR3D:- 1,125 base-pairs
- 2,946 base-stacking
- 77 base-phosphate
- 84 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8VPK contains:- 70 hairpin loops from 0 motif groups
- 118 internal loops from 0 motif groups
- 39 junction loops from 0 motif groups
3D Redundancy
8VPK has chains which belong to the following equivalence classes in the current representative set:- NR_all_76090.13 (1)
- NR_all_89181.9 (1)
- NR_4.0_76090.13 (1)
- NR_4.0_89181.9 (1)
- NR_3.5_76090.13 (1)
- NR_3.5_89181.9 (1)
- NR_3.0_76090.13 (1)
- NR_3.0_89181.9 (1)
- NR_20.0_76090.13 (1)
- NR_20.0_89181.9 (1)