8Y38 Summary
- Structure title
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Authors
- Li, Y., Lu, G., Li, J., Pei, X., Lin, J.
- Release date
- 2024-07-24
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
- Chains
- 3 RNA chains from Staphylococcus aureus
- 47 other chains
- Nucleic acid compounds
- Other compounds
- 23S ribosomal RNA, 5S ribosomal RNA, 16S ribosomal RNA
- Large ribosomal subunit protein bL33B, Large ribosomal subunit protein bL34, Large ribosomal subunit protein bL35, Large ribosomal subunit protein bL36, Large ribosomal subunit protein uL2, Large ribosomal subunit protein uL3, Large ribosomal subunit protein uL4, Large ribosomal subunit protein uL5, Large ribosomal subunit protein uL6, Large ribosomal subunit protein uL13, Large ribosomal subunit protein uL14, Large ribosomal subunit protein uL15, Large ribosomal subunit protein uL16, Large ribosomal subunit protein bL17, Large ribosomal subunit protein uL18, Large ribosomal subunit protein bL19, Large ribosomal subunit protein bL20, Large ribosomal subunit protein bL21, Large ribosomal subunit protein uL22, Large ribosomal subunit protein uL23, Large ribosomal subunit protein uL24, Large ribosomal subunit protein bL25, Large ribosomal subunit protein bL27, Large ribosomal subunit protein bL28, Large ribosomal subunit protein uL29, Large ribosomal subunit protein uL30, Large ribosomal subunit protein bL31B, Large ribosomal subunit protein bL32, Small ribosomal subunit protein uS2, Small ribosomal subunit protein uS3, Small ribosomal subunit protein uS4, Small ribosomal subunit protein uS5, Small ribosomal subunit protein bS6, Small ribosomal subunit protein uS7, Small ribosomal subunit protein uS8, Small ribosomal subunit protein uS9, Small ribosomal subunit protein uS10, Small ribosomal subunit protein uS11, Small ribosomal subunit protein uS12, Small ribosomal subunit protein uS13, Small ribosomal subunit protein uS14B, Small ribosomal subunit protein uS15, Small ribosomal subunit protein bS16, Small ribosomal subunit protein uS17, Small ribosomal subunit protein bS18, Small ribosomal subunit protein uS19, Small ribosomal subunit protein bS20
Pairwise Interactions
Interactions annotated by FR3D:- 1,677 base-pairs
- 4,516 base-stacking
- 100 base-phosphate
- 137 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8Y38 contains:- 108 hairpin loops from 0 motif groups
- 205 internal loops from 0 motif groups
- 62 junction loops from 0 motif groups
3D Redundancy
8Y38 has chains which belong to the following equivalence classes in the current representative set:- NR_all_90633.27 (1)
- NR_all_83891.26 (1)
- NR_all_74023.17 (1)
- NR_4.0_90633.27 (1)
- NR_4.0_83891.26 (1)
- NR_4.0_74023.17 (1)
- NR_3.5_90633.27 (1)
- NR_3.5_83891.26 (1)
- NR_3.5_74023.17 (1)
- NR_3.0_90633.27 (1)
- NR_3.0_83891.26 (1)
- NR_3.0_74023.17 (1)
- NR_20.0_90633.27 (1)
- NR_20.0_83891.26 (1)
- NR_20.0_74023.17 (1)