8Z71 Summary
- Structure title
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Authors
- Cheng, J., Wu, C.L., Li, J.X., Zhang, X.Z.
- Release date
- 2024-12-11
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
- Chains
- 6 RNA chains from Saccharomyces cerevisiae S288C, Oryctolagus cuniculus
- 76 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA, 25S rRNA, 5S rRNA, 5.8S rRNA, tRNA, tRNA
- Large ribosomal subunit protein uL2A, Large ribosomal subunit protein uL3, Large ribosomal subunit protein uL4A, Large ribosomal subunit protein uL18, Large ribosomal subunit protein eL6B, Large ribosomal subunit protein uL30A, Large ribosomal subunit protein eL8A, Large ribosomal subunit protein uL6A, Large ribosomal subunit protein uL16, Large ribosomal subunit protein uL5B, Large ribosomal subunit protein eL13A, Large ribosomal subunit protein eL14A, Large ribosomal subunit protein eL15A, Large ribosomal subunit protein uL13A, Large ribosomal subunit protein uL22A, Large ribosomal subunit protein eL18A, Small ribosomal subunit protein uS3, Small ribosomal subunit protein uS7, Small ribosomal subunit protein eS10A, Small ribosomal subunit protein eS12, Small ribosomal subunit protein uS19, Small ribosomal subunit protein uS9A, Small ribosomal subunit protein eS17A, Small ribosomal subunit protein uS13A, Small ribosomal subunit protein eS19A, Small ribosomal subunit protein uS10, Small ribosomal subunit protein eS25A, Small ribosomal subunit protein eS28A, Small ribosomal subunit protein uS14A, Small ribosomal subunit protein eS31, Small ribosomal subunit protein RACK1, Small ribosomal subunit protein uS2A, Small ribosomal subunit protein eS1A, Small ribosomal subunit protein uS5, Small ribosomal subunit protein eS4A, Small ribosomal subunit protein eS6A, Small ribosomal subunit protein eS7A, Small ribosomal subunit protein eS8A, Small ribosomal subunit protein uS4A, Small ribosomal subunit protein uS17A, Small ribosomal subunit protein uS15, Small ribosomal subunit protein uS11B, Small ribosomal subunit protein eS21A, Small ribosomal subunit protein uS8A, Small ribosomal subunit protein uS12A, Small ribosomal subunit protein eS24A, Small ribosomal subunit protein eS26A, Small ribosomal subunit protein eS27A, Small ribosomal subunit protein eS30A, Large ribosomal subunit protein eL19A, Large ribosomal subunit protein eL20A, Large ribosomal subunit protein eL21A, Large ribosomal subunit protein eL22A, Large ribosomal subunit protein uL14A, Large ribosomal subunit protein eL24A, Large ribosomal subunit protein uL23, Large ribosomal subunit protein uL24A, Large ribosomal subunit protein eL27A, Large ribosomal subunit protein uL15, Large ribosomal subunit protein eL29, Large ribosomal subunit protein eL30, Large ribosomal subunit protein eL31A, Large ribosomal subunit protein eL32, Large ribosomal subunit protein eL33A, Large ribosomal subunit protein eL34A, Large ribosomal subunit protein uL29A, Large ribosomal subunit protein eL36A, Large ribosomal subunit protein eL37A, Large ribosomal subunit protein eL38, Large ribosomal subunit protein eL39, Large ribosomal subunit protein eL40A, Large ribosomal subunit protein eL41A, Large ribosomal subunit protein eL42A, Large ribosomal subunit protein eL43A, Elongation factor 3A, Elongation factor 1-alpha 1
Pairwise Interactions
Interactions annotated by FR3D:- 1,726 base-pairs
- 4,981 base-stacking
- 207 base-phosphate
- 247 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8Z71 contains:- 120 hairpin loops from 0 motif groups
- 241 internal loops from 0 motif groups
- 78 junction loops from 0 motif groups
3D Redundancy
8Z71 has chains which belong to the following equivalence classes in the current representative set:- NR_all_81815.3 (1)
- NR_all_03510.72 (1)
- NR_all_90506.81 (1)
- NR_all_18586.76 (1)
- NR_all_34284.3 (1)
- NR_4.0_81815.3 (1)
- NR_4.0_03510.72 (1)
- NR_4.0_90506.81 (1)
- NR_4.0_18586.76 (1)
- NR_4.0_34284.3 (1)
- NR_20.0_81815.3 (1)
- NR_20.0_03510.72 (1)
- NR_20.0_90506.81 (1)
- NR_20.0_18586.76 (1)
- NR_20.0_34284.3 (1)
Similar structures
7ZW0 8CDR 8CEH 8T2Y 8C01 8EVP 9N74 8CGN 6T4Q 7MPJ 8P9A 8CAH 8T2Z 8P9A 8EWB 6TB3 8T2X 8C00 7N8B 5TBW 9F9S 8EWC 8EVT 4V88 5TBW 8K82 7ZUX 8PNN 8P4V 4V88 7MPI 8CF5 9F9S 8BN3 7ZPQ 8CAS 8P4V 8PNN 6ZVI 8P85 7OSA 6SNT 9N75 9G33 9N6W 6HHQ 6Q8Y 8EVQ 5I4L 5OBM 8ZH3 8ZHC 8P85 8K2D 5MEI 5NDW 5LYB 7RR5 5I4L 8T3D 6T7I 5MEI 9N6V 5OBM 5ON6 8UTI 6LQP 5LYB 5NDW 6HHQ 5NDV 5ON6 8UT0 5NDV 8CG8 8EVS 8EVR 7OSM 7A1G 6WOO 8T3E 6T7T 6Z6K 6ZQB 8EUB 6SV4 7WTR 6TNU 5M1J 7ZUW 6FAI 7WTN 6ZQC 6S47 8C83 8T3F 6T83 8T3A 8Z70 7WTL 5NDG 7WTO 5FCJ 8T30 7ZRS 7AJU 7WTM 8T3B 7B7D 7WTP 5NDG 5FCJ 7NRC 8XU8 6SV4 6Z6J 6XIR 8Y0U 6RBD 9N6Y 6ZQD 7WTQ 7NRD 6SV4 6XIQ 9N7B 8ZHB 6ZQG 8ZGY 6KE6 7SUK 6GQV 9N6X 6T83 6GQB 6LQS 9N79 9N77 5MC6 7AJT 9N7A 5LL6 5TGM 6EML 8T3C 8ZGR 6GQ1 5TGM 5JUP 8YLR 6Y7C 6LQU 8BQX 5WLC 7D4I 8YLD 9N76 9N78 8BQD 6I7O 5JUT 6I7O 5WYK 6ZCE 6LQQ 5JUO 6ZU9 9N6Z 3J6Y 3J6X 4V8Y 3J78 3J77 6LQT 5JUS 6RBE 9N70 7D5S 7D5T 9N73 6LQV 6ZQF 9N72 6ZQE 4V8Z 5TZS 5WYJ 6LQR 4V7R 4V7R 4V6I 7D63 5DAT 5DGV 5DGE 5DGF 5TGA 5DC3 5DAT 5DGV 5DGE 5TGA 5DGF 5FCI 5DC3 5FCI 8CCS 8CIV 5JUU 4U4R 4U3U 4U4R 4U3U 4U3M 4U4Q 4U4U 4U52 4U3M 4U6F 4U52 4U4N 4U4U 4U4Q 4U6F 4U4Z 4U4Y 4U3N 4U55 4U4Z 4U4N 4U3N 4U50 4U51 4U4Y 4U51 4U55 4U50 4U53 4U53 4U56 4U56 4U4O 4U4O 8CDL 8CKU 8CMJStructures from NR_all_03510.72