9BKD Summary
- Structure title
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Authors
- Brito Querido, J., Sokabe, M., Diaz-Lopez, I., Gordiyenko, Y., Zuber, P., Albacete-Albacete, L., Ramakrishnan, V., S.Fraser, C.
- Release date
- 2024-09-04
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
- Chains
- 1 RNA chain from Homo sapiens
- 35 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA
- 60S ribosomal protein L41, Small ribosomal subunit protein uS17, Small ribosomal subunit protein eS4, X isoform, Small ribosomal subunit protein uS4, Small ribosomal subunit protein uS12, Small ribosomal subunit protein eS30, Small ribosomal subunit protein eS7, 40S ribosomal protein S27, 40S ribosomal protein S13, 40S ribosomal protein S15a, 40S ribosomal protein S21, 40S ribosomal protein S2, 40S ribosomal protein S17, Small ribosomal subunit protein uS2, 40S ribosomal protein S3a, 40S ribosomal protein S14, 40S ribosomal protein S26, Small ribosomal subunit protein eS8, Small ribosomal subunit protein eS6, Small ribosomal subunit protein eS24, Programmed cell death protein 4, 40S ribosomal protein S5, 40S ribosomal protein S16, Small ribosomal subunit protein uS3, Small ribosomal subunit protein eS10, 40S ribosomal protein S15, Receptor of activated protein C kinase 1, 40S ribosomal protein S19, Small ribosomal subunit protein eS25, Small ribosomal subunit protein uS13, 40S ribosomal protein S20, 40S ribosomal protein S29, Ubiquitin-40S ribosomal protein S27a, 40S ribosomal protein S12, 40S ribosomal protein S28
Pairwise Interactions
Interactions annotated by FR3D:- 619 base-pairs
- 1,674 base-stacking
- 81 base-phosphate
- 97 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 9BKD contains:- 35 hairpin loops from 0 motif groups
- 104 internal loops from 0 motif groups
- 22 junction loops from 0 motif groups
3D Redundancy
9BKD has chains which belong to the following equivalence classes in the current representative set:- NR_all_46995.58 (1)
- NR_4.0_46995.58 (1)
- NR_3.5_46995.58 (1)
- NR_3.0_46995.58 (1)
- NR_20.0_46995.58 (1)
Similar structures
8GLP 8QOI 8YOO 9C3H 8G5Y 6ZLW 8T4S 8YOP 6ZXG 8G60 8G5Z 9PBE 6ZMI 9FQZ 8K2C 9P8B 6ZP4 9RPV 8PPL 6ZXH 7XNY 7XNX 9P7E 6ZM7 8XSX 9P7D 9P7O 8XXL 9RPV 6ZVH 9P73 7MQA 8PJ5 7K5I 9ED0 6ZOJ 6ZME 9P7Y 6ZMO 8PJ6 9P72 9P7C 6ZV6 6Y2L 7WTX 9KRP 7WTZ 9P7K 7QVP 8G61 9P7A 9P7X 9KN5 9P76 9P6Z 8XXM 9P7N 6ZMT 6ZON 6Z6M 7R4X 7WTU 9KN6 9P9I 6ZN5 9KN0 7WTT 6ZXE 9KZU 6ZXD 8PJ4 8Y0X 9KKF 8XP2 8OZ0 9KMW 8JDJ 6Y0G 8G6J 9P78 9P7L 9P9H 9KMZ 9KMY 7A09 7WTW 6ZOK 7QVP 6ZUO 9G8O 6OM0 6OLE 9P7W 6YBW 7WU0 8JDL 8XXN 8XSY 9PA7 8XP3 9KMT 8XSZ 9KMV 8JDK 8PJ2 9KMU 9AZM 6ZXF 8Y0W 8JDM 9P8H 6ZOL 8PJ1 9B0P 6XA1 6Y57 8UKB 7TQL 9B0Q 7QP7 9KMX 9P79 8IFE 9P8C 9BLN 7WTS 9B0Q 6ZVJ 9SYR 8PJ3 9B0S 4UG0 9P7G 8IFD 6G5I 9P7F 9G8M 7WTV 9PKG 9P7I 9P7H 6G5H 9M0P 6G18 6IP5 5A2Q 9B0S 6OLI 7MQ8 6IP8 9P7J 9P8I 6G51 9KZX 5LKS 6G4S 8UIK 6OLG 7MQ9 7QP6 5OA3 6OLF 8RG0 6OLZ 6G53 6G4W 6OM7 6IP6 5VYC 5VYC 5VYC 5VYC 5VYC 6FEC 5VYC 4V6X 5A8L 9AZC 5T2C 6Z6L 6Z6N 6ZMW 5AJ0 8PPK 6QZP 8ZDB 8ZDD 8ZDCStructures from NR_all_46995.58