9DP7 Summary
- Structure title
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Authors
- Zhao, Y., Li, H.
- Release date
- 2026-05-20
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
- Chains
- 5 RNA chains from Saccharomyces cerevisiae, Taura syndrome virus
- 75 other chains
- Nucleic acid compounds
- Other compounds
- 25S rRNA, 5S rRNA, 5.8S rRNA, 18S rRNA, TSV IRES RNA
- 60S ribosomal protein L2-A, 60S ribosomal protein L3, Large ribosomal subunit protein uL4A, Large ribosomal subunit protein uL18, 60S ribosomal protein L6-A, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, Large ribosomal subunit protein uL16, Large ribosomal subunit protein uL5A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, 60S ribosomal protein L20, 60S ribosomal protein L21-A, 60S ribosomal protein L22-A, 60S ribosomal protein L23-A, Large ribosomal subunit protein eL24A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L27-A, 60S ribosomal protein L28, Large ribosomal subunit protein eL29, 60S ribosomal protein L30, 60S ribosomal protein L31-A, Large ribosomal subunit protein eL32, 60S ribosomal protein L33-A, 60S ribosomal protein L34-A, 60S ribosomal protein L35-A, 60S ribosomal protein L36-A, 60S ribosomal protein L37-A, Large ribosomal subunit protein eL38, 60S ribosomal protein L39, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L41-A, 60S ribosomal protein L42-A, 60S ribosomal protein L43-A, 40S ribosomal protein S0-A, Small ribosomal subunit protein eS1A, Small ribosomal subunit protein uS5, Small ribosomal subunit protein uS3, 40S ribosomal protein S4-A, Rps5p, 40S ribosomal protein S6-A, 40S ribosomal protein S7-A, 40S ribosomal protein S8-A, 40S ribosomal protein S9-A, 40S ribosomal protein S10-A, 40S ribosomal protein S11-A, Small ribosomal subunit protein eS12, 40S ribosomal protein S13, 40S ribosomal protein S14-A, Small ribosomal subunit protein uS19, 40S ribosomal protein S16-A, 40S ribosomal protein S17-A, 40S ribosomal protein S18-A, 40S ribosomal protein S19-A, Small ribosomal subunit protein uS10, 40S ribosomal protein S21-A, Small ribosomal subunit protein uS8A, 40S ribosomal protein S23-A, 40S ribosomal protein S24-A, Small ribosomal subunit protein eS25A, Small ribosomal subunit protein eS26B, 40S ribosomal protein S27-A, Small ribosomal subunit protein eS28A, Small ribosomal subunit protein uS14A, 40S ribosomal protein S30-A, RPS31 isoform 1, Guanine nucleotide-binding protein subunit beta-like protein, Large ribosomal subunit protein uL1A
Pairwise Interactions
Interactions annotated by FR3D:- 1,975 base-pairs
- 5,210 base-stacking
- 529 base-phosphate
- 573 base-ribose
- 254 oxygen stacking
- 360 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 9DP7 contains:- 117 hairpin loops from 0 motif groups
- 237 internal loops from 0 motif groups
- 69 junction loops from 0 motif groups
3D Redundancy
9DP7 has chains which belong to the following equivalence classes in the current representative set:- NR_all_03510.74 (1)
- NR_all_90506.84 (1)
- NR_all_18586.78 (1)
- NR_all_04576.5 (1)
- NR_4.0_03510.74 (1)
- NR_4.0_90506.84 (1)
- NR_4.0_18586.78 (1)
- NR_4.0_04576.5 (1)
- NR_3.5_03510.74 (1)
- NR_3.5_90506.84 (1)
- NR_3.5_18586.78 (1)
- NR_3.5_04576.5 (1)
- NR_3.0_03510.74 (1)
- NR_3.0_90506.84 (1)
- NR_3.0_18586.78 (1)
- NR_3.0_04576.5 (1)
- NR_20.0_03510.74 (1)
- NR_20.0_90506.84 (1)
- NR_20.0_18586.78 (1)
- NR_20.0_04576.5 (1)
- NR_2.5_03510.74 (1)
- NR_2.5_90506.84 (1)
- NR_2.5_18586.78 (1)
- NR_2.5_04576.5 (1)
Similar structures
9PN5 8CEH 8CDR 8T2Y 8PFR 7ZW0 8P8N 8EVT 8P8U 8BN3 8T2Z 8AGX 8EVP 8T2X 8EWC 8AAF 8AGT 8CGN 8AGZ 8AGV 6T4Q 8EVS 8AGW 7UQB 8AGU 8ZHC 8EVQ 8HFR 9F9S 7V08 7MPJ 8EWB 7UOO 7TOO 7ZUX 7TOP 9F9S 7N8B 6TB3 9DOV 8EVR 8P9A 8CG8 8P8M 8P9A 7MPI 6SNT 8ZH3 7UQZ 8CF5 8T30 8ZGY 7ZPQ 5TBW 8ZHB 5TBW 8T3A 8K82 9R9O 8PNN 4V88 4V88 8PNN 8T3D 8EUB 6YLG 8P4V 8P4V 6Q8Y 8ZGR 7AZY 8K2D 6XIR 8P85 6T7I 8P85 9R9P 6TNU 6T7T 8BIP 7OSA 5I4L 6RZZ 8UTI 8T3E 5I4L 9OFV 6Z6K 5MEI 6QIK 5MEI 7U0H 8T3F 6HHQ 5OBM 6HHQ 8T3B 5OBM 8UT0 6N8O 6WOO 7BT6 7RR5 6YLH 5LYB 5NDV 6R87 5ON6 7B7D 5LYB 6M62 6N8M 5ON6 6R86 7ZS5 5NDV 7R7A 6S47 7BTB 7OHQ 6N8J 5NDW 5NDW 7NAC 6QT0 6N8L 7OSM 6Z6J 7ZUW 8Z70 6N8K 6R84 7ZRS 5M1J 3JCT 6RI5 7UG6 6SV4 6T83 7OF1 5FCJ 8Y0U 7OH3 5FCJ 5APO 7NRC 6N8N 8XU8 8V87 5NDG 8BJQ 8V83 6SV4 5NDG 6GQV 6FT6 5JUP 6GQB 6HD7 6T83 7Z34 5APN 6OIG 8BQX 6YLY 5MC6 8T3C 8YLR 8BQD 8V84 6SV4 6ELZ 6XIQ 6GQ1 7NRD 7OHX 8YLD 6YLX 5TGM 5TGM 7OHU 7OHV 6EM1 5T6R 5JUT 5H4P 7OHW 7OHY 8Z71 7OHP 7OHR 6C0F 6EM3 5JUO 6EM5 4V8Y 6I7O 6I7O 7OHS 5JUS 6EM4 3J6Y 3J6X 7OHT 9QJC 3J77 3J78 5Z3G 8E5T 6CB1 4V8Z 4V8T 4V7F 5GAK 5JCS 4V6I 4V7R 4V7R 5DGV 5DAT 5DGV 5DAT 5DGE 5DGF 5DGF 5DGE 5DC3 5TGA 5TGA 5DC3 5FCI 5FCI 8CCS 8CIV 5JUU 6S05 4U4R 4U4R 4U3U 4U3U 4U3M 4U4Q 4U3M 4U4U 4U4Q 4U4U 4U52 4U52 4U6F 4U6F 4U4N 4U4N 4U4Z 4U4Z 4U3N 4U4Y 4U3N 4U55 4U4Y 4U51 4U51 4U55 4U50 4U50 4U53 4U53 4U56 4U56 4U4O 4U4O 8CDL 8CKU 9F58 5T62 8CMJ 6QTZStructures from NR_all_90506.84