9ED9 Summary
- Structure title
- SpCas9 with 17-bp R-loop containing 2 terminal mismatches (State III - checkpoint)
- Authors
- Kiernan, K.A., Taylor, D.W.
- Release date
- 2025-06-18
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.0 Å
- Chains
- 1 RNA chain from synthetic construct
-
3 DNA chains
- 1 other chain
- Nucleic acid compounds
- Other compounds
- sgRNA, PAM-distal Target Strand, Non-target strand, PAM-proximal Target Strand
- CRISPR-associated endonuclease Cas9/Csn1
Pairwise Interactions
Interactions annotated by FR3D:- 51 base-pairs
- 152 base-stacking
- 2 base-phosphate
- 0 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 9ED9 contains:- 4 hairpin loops from 0 motif groups
- 2 internal loops from 0 motif groups
- 0 junction loops from 0 motif groups
3D Redundancy
9ED9 has chains which belong to the following equivalence classes in the current representative set:- NR_all_56990.4 (1)
- NR_4.0_56990.4 (1)
- NR_3.5_56990.4 (1)
- NR_3.0_56990.4 (1)
- NR_20.0_56990.4 (1)
Similar structures
5B2T 5B2R 5B2S 7Z4L 8SRS 7S4X 7Z4J 6AI6 4OO8 9EAL 9EAK 4OO8 6O0X 6O0Y 8T7S 7Z4I 8T6X 8T6T 6O0Z 9CGU 9C9P 9EDA 8SPQ 7S4V 8YE6 8U3Y 9EDB 8T79 8T6Y 8T78 8SQH 7Z4H 7Z4D 8T6P 4ZT0 8T7S 7Z4D 4ZT0 8TZZ 4ZT9 7S4U 7Z4C 7Z4G 8T77 8T6S 4ZT9 5XBL 8T76 7Z4K 6IFO 7Z4E 6IFOStructures from NR_all_56990.4