9HYM Summary
- Structure title
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Authors
- Mitropoulou, A., Wlodarski, T., Plessa, E., Cabrita, L.D., Christodoulou, J.
- Release date
- 2026-01-21
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
- Chains
- 5 RNA chains from Escherichia coli
- 29 other chains
- Nucleic acid compounds
- Other compounds
- Acetyl Pro-tRNA, mRNA, 5S rRNA, 23S rRNA, Peptidyl Pro-tRNA
- Large ribosomal subunit protein bL28, Large ribosomal subunit protein uL29, Large ribosomal subunit protein uL30, Large ribosomal subunit protein bL32, Large ribosomal subunit protein bL33, Large ribosomal subunit protein bL34, Large ribosomal subunit protein bL35, 50S ribosomal protein L36, Large ribosomal subunit protein uL2, 50S ribosomal protein L3, Large ribosomal subunit protein uL4, Large ribosomal subunit protein uL5, Large ribosomal subunit protein uL6, Large ribosomal subunit protein bL9, Large ribosomal subunit protein uL13, Large ribosomal subunit protein uL14, Large ribosomal subunit protein uL15, 50S ribosomal protein L16, Large ribosomal subunit protein bL17, Large ribosomal subunit protein uL18, Large ribosomal subunit protein bL19, Large ribosomal subunit protein bL20, Large ribosomal subunit protein bL21, Large ribosomal subunit protein uL22, Large ribosomal subunit protein uL23, Large ribosomal subunit protein uL24, Large ribosomal subunit protein bL25, Large ribosomal subunit protein bL27, Gelation factor
Pairwise Interactions
Interactions annotated by FR3D:- 1,262 base-pairs
- 3,248 base-stacking
- 220 base-phosphate
- 217 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 9HYM contains:- 78 hairpin loops from 0 motif groups
- 106 internal loops from 0 motif groups
- 42 junction loops from 0 motif groups
3D Redundancy
9HYM has chains which belong to the following equivalence classes in the current representative set:- NR_all_10157.165 (1)
- NR_all_83717.167 (1)
- NR_all_56101.10 (2)
- NR_all_27490.1 (1) rep
- NR_4.0_10157.165 (1)
- NR_4.0_83717.167 (1)
- NR_4.0_56101.10 (2)
- NR_4.0_27490.1 (1) rep
- NR_3.5_10157.165 (1)
- NR_3.5_83717.167 (1)
- NR_3.5_56101.10 (2)
- NR_3.5_27490.1 (1) rep
- NR_3.0_10157.165 (1)
- NR_3.0_83717.167 (1)
- NR_3.0_56101.10 (2)
- NR_3.0_27490.1 (1) rep
- NR_20.0_10157.165 (1)
- NR_20.0_83717.167 (1)
- NR_20.0_56101.10 (2)
- NR_20.0_27490.1 (1) rep
- NR_2.5_10157.165 (1)
- NR_2.5_83717.167 (1)
- NR_2.5_56101.10 (2)
- NR_2.5_27490.1 (1) rep