9I89 Summary
- Structure title
- Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- Authors
- Novotna, M., Boissier, F., Balikova Novotna, G., Innis, C.A.
- Release date
- 2026-04-15
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.0 Å
- Chains
- 4 RNA chains from Staphylococcus aureus
- 47 other chains
- Nucleic acid compounds
- Other compounds
- 23S ribosomal RNA, 5S ribosomal RNA, fMet-P-tRNA, 16S ribosomal RNA
- Large ribosomal subunit protein bL28, Large ribosomal subunit protein uL29, Large ribosomal subunit protein uL30, Large ribosomal subunit protein bL31B, Large ribosomal subunit protein bL32, Large ribosomal subunit protein bL33A, Large ribosomal subunit protein bL34, Large ribosomal subunit protein bL35, Large ribosomal subunit protein bL36, Large ribosomal subunit protein uL24, Large ribosomal subunit protein uL2, Large ribosomal subunit protein uL3, Large ribosomal subunit protein uL4, Large ribosomal subunit protein uL5, Large ribosomal subunit protein uL6, Large ribosomal subunit protein uL13, Large ribosomal subunit protein uL14, Large ribosomal subunit protein uL15, Large ribosomal subunit protein uL16, Large ribosomal subunit protein bL17, Large ribosomal subunit protein uL18, Large ribosomal subunit protein bL19, Large ribosomal subunit protein bL20, Large ribosomal subunit protein bL21, Large ribosomal subunit protein uL22, Large ribosomal subunit protein uL23, Large ribosomal subunit protein bL25, Large ribosomal subunit protein bL27, Small ribosomal subunit protein uS2, Small ribosomal subunit protein uS3, Small ribosomal subunit protein uS4, Small ribosomal subunit protein uS5, Small ribosomal subunit protein bS6, Small ribosomal subunit protein uS7, Small ribosomal subunit protein uS8, Small ribosomal subunit protein uS9, Small ribosomal subunit protein uS10, Small ribosomal subunit protein uS11, Small ribosomal subunit protein uS12, Small ribosomal subunit protein uS13, Small ribosomal subunit protein uS14B, Small ribosomal subunit protein uS15, Small ribosomal subunit protein bS16, Small ribosomal subunit protein uS17, Small ribosomal subunit protein bS18, Small ribosomal subunit protein uS19, Small ribosomal subunit protein bS20
Pairwise Interactions
Interactions annotated by FR3D:- 1,905 base-pairs
- 4,781 base-stacking
- 536 base-phosphate
- 579 base-ribose
- 219 oxygen stacking
- 422 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 9I89 contains:- 103 hairpin loops from 0 motif groups
- 178 internal loops from 0 motif groups
- 64 junction loops from 0 motif groups
3D Redundancy
9I89 has chains which belong to the following equivalence classes in the current representative set:- NR_all_90633.29 (1)
- NR_all_83891.28 (1)
- NR_all_74023.19 (1)
- NR_all_53806.1 (1) rep
- NR_4.0_90633.29 (1)
- NR_4.0_83891.28 (1)
- NR_4.0_74023.19 (1)
- NR_4.0_53806.1 (1) rep
- NR_3.5_90633.29 (1)
- NR_3.5_83891.28 (1)
- NR_3.5_74023.19 (1)
- NR_3.5_53806.1 (1) rep
- NR_20.0_90633.29 (1)
- NR_20.0_83891.28 (1)
- NR_20.0_74023.19 (1)
- NR_20.0_53806.1 (1) rep
Similar structures
9QEH 9QEG 9GHG 9T4R 7ASM 9GHH 6WQN 7TTW 6WRU 6S0Z 6WQQ 9I88 7ASP 6WRS 6DDG 7NHM 4WF9 5NGM 5HL7 6DDD 7NHL 7ASO 4WFA 5T7V 4WFB 5HKV 4WCE 7TTU 6S0X 5NRG 6SJ6 5ND8 5TCU 5ND9 6S12 7ASN 5LI0 6FXC 6FXC 7P48 6S13 8P2G 8P2F 8P2H 8Y38 8Y37 6HMA 8Y36 6YEF 8Y39Structures from NR_all_90633.29