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9J1M Summary

View in PDB or NAKB
Circular interaction diagram PDF
Structure title
KU13-bond Mycobacterium tuberculosis 70S ribosome
Authors
Nishihara, D., Fujino, M., Tanaka, Y., Yokoyama, T.
Release date
2025-03-19
Experimental technique
ELECTRON MICROSCOPY
Resolution
2.3 Å
Chains
4 RNA chains from Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2
48 other chains
Nucleic acid compounds
23S rRNA, 5S rRNA, 16S rRNA, tRNA
Other compounds
Large ribosomal subunit protein bL32, Large ribosomal subunit protein bL33A, Large ribosomal subunit protein bL34, Large ribosomal subunit protein bL35, Large ribosomal subunit protein bL36, 30S ribosomal protein THX, Large ribosomal subunit protein uL2, Large ribosomal subunit protein uL3, Large ribosomal subunit protein uL4, Large ribosomal subunit protein uL5, Large ribosomal subunit protein uL6, Large ribosomal subunit protein bL9, Large ribosomal subunit protein uL13, Large ribosomal subunit protein uL14, Large ribosomal subunit protein uL15, Large ribosomal subunit protein uL16, Large ribosomal subunit protein bL17, Large ribosomal subunit protein uL18, Large ribosomal subunit protein bL19, Large ribosomal subunit protein bL20, Large ribosomal subunit protein bL21, Large ribosomal subunit protein uL22, Large ribosomal subunit protein uL23, Large ribosomal subunit protein uL24, Large ribosomal subunit protein bL25, Large ribosomal subunit protein bL27, Large ribosomal subunit protein bL28, Large ribosomal subunit protein uL29, Large ribosomal subunit protein uL30, Small ribosomal subunit protein uS3, Small ribosomal subunit protein uS4, Small ribosomal subunit protein uS5, Small ribosomal subunit protein bS6, Small ribosomal subunit protein uS7, Small ribosomal subunit protein uS8, Small ribosomal subunit protein uS9, Small ribosomal subunit protein uS10, Small ribosomal subunit protein uS11, Small ribosomal subunit protein uS12, Small ribosomal subunit protein uS13, Small ribosomal subunit protein uS14B, Small ribosomal subunit protein uS15, Small ribosomal subunit protein bS16, Small ribosomal subunit protein uS17, Small ribosomal subunit protein bS18A, Small ribosomal subunit protein uS19, Small ribosomal subunit protein bS20, Mitochondrial domain of uncharacterised function (DUF1713)

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 9J1M contains:
  • 103 hairpin loops from 0 motif groups
  • 179 internal loops from 0 motif groups
  • 61 junction loops from 0 motif groups
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3D Redundancy

9J1M has chains which belong to the following equivalence classes in the current representative set:

Similar structures

7KGB 7MT7 7MT2 7MSM 7MSC 7MT3 7SFR 7MSZ 7MSH 7F0D 5V93 5V7Q
Structures from NR_all_35677.6
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