- Structure title
- The structure of RNA polymerase II elongation complex paused at N-2 state by actinomycin D.
- Authors
- Xu, J., Zhao, W., Zhu, L.
- Release date
- 2025-11-12
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
- Chains
-
1 RNA chain from
synthetic construct
-
2 DNA chains
-
-
13 other chains
- Nucleic acid compounds
RNA (5'-R(*CP*CP*CP*UP*AP*AP*GP*AP*GP*UP*AP*C)-3'), NTS(non-template strand), TS(template strand)
- Other compounds
DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, Actinomycin D
Pairwise Interactions
Interactions annotated by
FR3D:
View all
RNA 3D Motifs
In the current release of the
RNA 3D Motif Atlas, 9KD8 contains:
-
0 hairpin loops from 0 motif groups
-
0 internal loops from 0 motif groups
-
0 junction loops from 0 motif groups
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3D Redundancy
This PDB is not included in any representative set equivalence class. Possibly, this PDB doesn't contain any complete nucleotides.
Similar structures
None found
