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9PDJ Summary

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Circular interaction diagram
Structure title
Composite map of open form of PIC-Med-SWI/SNF
Authors
Yang, C., Nagai, S., Chen, D.-H.
Release date
2026-10-14
Experimental technique
ELECTRON MICROSCOPY
Resolution
2.8 Å
Chains
4 DNA chains
134 other chains
Nucleic acid compounds
promoter DNA, promoter DNA, promoter DNA, promoter DNA
Other compounds
General transcription and DNA repair factor IIH helicase subunit XPD/RAD3, General transcription and DNA repair factor IIH subunit TFB1, General transcription and DNA repair factor IIH subunit TFB2, RNA polymerase II transcription factor B subunit 3, General transcription and DNA repair factor IIH subunit TFB4, General transcription and DNA repair factor IIH subunit TFB5, General transcription and DNA repair factor IIH subunit SSL1, General transcription and DNA repair factor IIH helicase subunit XPB, SWI/SNF chromatin-remodeling complex subunit SNF5, Transcription initiation factor TFIID subunit 14, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, Transcription initiation factor IIB, TATA-box-binding protein, Transcription initiation factor IIF subunit alpha, Transcription initiation factor IIF subunit beta, Transcription elongation factor S-II, Transcription initiation factor IIA large subunit, Transcription initiation factor IIA subunit 2, Transcription initiation factor IIE subunit alpha, Transcription initiation factor IIE subunit beta, General transcription and DNA repair factor IIH helicase subunit XPD/RAD3, General transcription and DNA repair factor IIH subunit TFB1, General transcription and DNA repair factor IIH subunit TFB2, RNA polymerase II transcription factor B subunit 3, General transcription and DNA repair factor IIH subunit TFB4, General transcription and DNA repair factor IIH subunit TFB5, General transcription and DNA repair factor IIH subunit SSL1, General transcription and DNA repair factor IIH helicase subunit XPB, SWI/SNF chromatin-remodeling complex subunit SNF5, Transcription initiation factor TFIID subunit 14, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, Transcription initiation factor IIB, TATA-box-binding protein, Transcription initiation factor IIF subunit alpha, Transcription initiation factor IIF subunit beta, Transcription elongation factor S-II, Transcription initiation factor IIA large subunit, Transcription initiation factor IIA subunit 2, Transcription initiation factor IIE subunit alpha, Transcription initiation factor IIE subunit beta, Mediator of RNA polymerase II transcription subunit 5, Mediator of RNA polymerase II transcription subunit 16, DNA-directed RNA polymerase II subunit RPB1, Mediator of RNA polymerase II transcription subunit 6, Mediator of RNA polymerase II transcription subunit 8, Mediator of RNA polymerase II transcription subunit 11, Mediator of RNA polymerase II transcription subunit 17, Mediator of RNA polymerase II transcription subunit 18, Mediator of RNA polymerase II transcription subunit 20, Mediator of RNA polymerase II transcription subunit 22, Mediator of RNA polymerase II transcription subunit 4, Mediator of RNA polymerase II transcription subunit 7, Mediator of RNA polymerase II transcription subunit 9, Mediator of RNA polymerase II transcription subunit 10, Mediator of RNA polymerase II transcription subunit 14, Mediator of RNA polymerase II transcription subunit 19, Mediator of RNA polymerase II transcription subunit 21, Mediator of RNA polymerase II transcription subunit 31, Mediator of RNA polymerase II transcription subunit 1, Transcription regulatory protein SNF12, SWI/SNF complex subunit SWI3, Transcription regulatory protein SNF6, SWI/SNF complex subunit SWI3, SWI/SNF global transcription activator complex subunit SWP82, SWI/SNF chromatin-remodeling complex subunit SNF5, unsigned peptide of SWISNF, Transcription regulatory protein SNF2, SWI/SNF chromatin-remodeling complex subunit SWI1, Regulator of Ty1 transposition protein 102, Actin-related protein 7, Actin-like protein ARP9, Mediator of RNA polymerase II transcription subunit 2, Mediator of RNA polymerase II transcription subunit 3, Mediator of RNA polymerase II transcription subunit 5, Mediator of RNA polymerase II transcription subunit 14, Mediator of RNA polymerase II transcription subunit 15, Mediator of RNA polymerase II transcription subunit 16, DNA-directed RNA polymerase II subunit RPB1, Mediator of RNA polymerase II transcription subunit 6, Mediator of RNA polymerase II transcription subunit 8, Mediator of RNA polymerase II transcription subunit 11, Mediator of RNA polymerase II transcription subunit 17, Mediator of RNA polymerase II transcription subunit 18, Mediator of RNA polymerase II transcription subunit 20, Mediator of RNA polymerase II transcription subunit 22, Mediator of RNA polymerase II transcription subunit 4, Mediator of RNA polymerase II transcription subunit 7, Mediator of RNA polymerase II transcription subunit 9, Mediator of RNA polymerase II transcription subunit 10, Mediator of RNA polymerase II transcription subunit 14, Mediator of RNA polymerase II transcription subunit 19, Mediator of RNA polymerase II transcription subunit 21, Mediator of RNA polymerase II transcription subunit 31, Mediator of RNA polymerase II transcription subunit 1, Transcription regulatory protein SNF12, SWI/SNF complex subunit SWI3, Transcription regulatory protein SNF6, SWI/SNF complex subunit SWI3, SWI/SNF global transcription activator complex subunit SWP82, SWI/SNF chromatin-remodeling complex subunit SNF5, unsigned peptide of SWISNF, Transcription regulatory protein SNF2, SWI/SNF chromatin-remodeling complex subunit SWI1, Regulator of Ty1 transposition protein 102, Actin-related protein 7, Actin-like protein ARP9, Mediator of RNA polymerase II transcription subunit 2, Mediator of RNA polymerase II transcription subunit 3, Mediator of RNA polymerase II transcription subunit 5, Mediator of RNA polymerase II transcription subunit 14, Mediator of RNA polymerase II transcription subunit 15, Mediator of RNA polymerase II transcription subunit 16

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 9PDJ contains:
  • 0 hairpin loops from 0 motif groups
  • 0 internal loops from 0 motif groups
  • 0 junction loops from 0 motif groups
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3D Redundancy

This PDB is not included in any representative set equivalence class. Possibly, this PDB doesn't contain any complete nucleotides.

Similar structures

None found
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