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9RPV Summary

View in PDB or NAKB
Circular interaction diagram PDF
Structure title
Structure of the ZAK-bound human disome
Authors
Niu, S., Beckmann, R.
Release date
2025-12-10
Experimental technique
ELECTRON MICROSCOPY
Resolution
2.4 Å
Chains
14 RNA chains from Homo sapiens
154 other chains
Nucleic acid compounds
mRNA of the collided 80S, mRNA of the stalled 80S, P/E tRNA on the collided 80S, P-site tRNA of the stalled 80S, A/P tRNA on the collided 80S, E-site tRNA of the stalled 80S, 28S rRNA of the collided 80S, 5S rRNA, 5.8S rRNA of the collided 80S, 28S rRNA of the stalled 80S, 5S rRNA, 5.8S rRNA of the stalled 80S, 18S rRNA of the collided 80S, 18S rRNA of the stalled 80S
Other compounds
Endothelial differentiation-related factor 1, 60S ribosomal protein L8, 60S ribosomal protein L3, 60S ribosomal protein L4, 60S ribosomal protein L5, Large ribosomal subunit protein eL6, Large ribosomal subunit protein uL30, 60S ribosomal protein L7a, 60S ribosomal protein L9, Ribosomal protein uL16-like, 60S ribosomal protein L11, Large ribosomal subunit protein eL13, 60S ribosomal protein L14, 60S ribosomal protein L15, 60S ribosomal protein L13a, 60S ribosomal protein L17, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L18a, 60S ribosomal protein L21, 60S ribosomal protein L22, 60S ribosomal protein L23, 60S ribosomal protein L24, 60S ribosomal protein L23a, 60S ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L27a, 60S ribosomal protein L29, 60S ribosomal protein L30, 60S ribosomal protein L31, 60S ribosomal protein L32, 60S ribosomal protein L35a, 60S ribosomal protein L34, 60S ribosomal protein L35, 60S ribosomal protein L36, Large ribosomal subunit protein eL37, 60S ribosomal protein L38, 60S ribosomal protein L39, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L41, 60S ribosomal protein L36a, 60S ribosomal protein L37a, 60S ribosomal protein L28, Large ribosomal subunit protein uL2, Large ribosomal subunit protein uL3, 60S ribosomal protein L4, 60S ribosomal protein L5, Large ribosomal subunit protein eL6, Large ribosomal subunit protein uL30, 60S ribosomal protein L7a, 60S ribosomal protein L9, 60S ribosomal protein L10, 60S ribosomal protein L11, Large ribosomal subunit protein eL13, 60S ribosomal protein L14, 60S ribosomal protein L15, 60S ribosomal protein L13a, 60S ribosomal protein L17, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L18a, 60S ribosomal protein L21, 60S ribosomal protein L22, 60S ribosomal protein L23, 60S ribosomal protein L24, 60S ribosomal protein L23a, 60S ribosomal protein L26, 60S ribosomal protein L27, Large ribosomal subunit protein uL15, Large ribosomal subunit protein eL29, 60S ribosomal protein L30, 60S ribosomal protein L31, 60S ribosomal protein L32, 60S ribosomal protein L35a, 60S ribosomal protein L34, 60S ribosomal protein L35, 60S ribosomal protein L36, Large ribosomal subunit protein eL37, 60S ribosomal protein L38, 60S ribosomal protein L39, Ubiquitin-ribosomal protein eL40 fusion protein, 60S ribosomal protein L41, Large ribosomal subunit protein eL42, 60S ribosomal protein L37a, Large ribosomal subunit protein eL28, 60S ribosomal protein L10a, Mitogen-activated protein kinase kinase kinase 20, Mitogen-activated protein kinase kinase kinase 20, Small ribosomal subunit protein uS2, 40S ribosomal protein S3a, 40S ribosomal protein S2, 40S ribosomal protein S3, Small ribosomal subunit protein eS4, X isoform, 40S ribosomal protein S5, 40S ribosomal protein S6, 40S ribosomal protein S7, 40S ribosomal protein S8, 40S ribosomal protein S9, 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, 40S ribosomal protein S13, 40S ribosomal protein S14, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17, 40S ribosomal protein S18, 40S ribosomal protein S19, 40S ribosomal protein S20, Small ribosomal subunit protein eS21, 40S ribosomal protein S15a, 40S ribosomal protein S23, 40S ribosomal protein S24, 40S ribosomal protein S25, 40S ribosomal protein S26, 40S ribosomal protein S27, 40S ribosomal protein S28, 40S ribosomal protein S29, Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein, Ubiquitin, Receptor of activated protein C kinase 1, 40S ribosomal protein SA, 40S ribosomal protein S3a, 40S ribosomal protein S2, 40S ribosomal protein S3, Small ribosomal subunit protein eS4, X isoform, 40S ribosomal protein S5, 40S ribosomal protein S6, 40S ribosomal protein S7, 40S ribosomal protein S8, 40S ribosomal protein S9, 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S13, 40S ribosomal protein S14, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17, 40S ribosomal protein S18, 40S ribosomal protein S19, 40S ribosomal protein S20, 40S ribosomal protein S21, 40S ribosomal protein S15a, 40S ribosomal protein S23, 40S ribosomal protein S24, 40S ribosomal protein S25, 40S ribosomal protein S26, 40S ribosomal protein S27, 40S ribosomal protein S28, 40S ribosomal protein S29, Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein, 40S ribosomal protein S12, Receptor of activated protein C kinase 1, Ubiquitin

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 9RPV contains:
  • 221 hairpin loops from 0 motif groups
  • 532 internal loops from 0 motif groups
  • 142 junction loops from 0 motif groups
More

3D Redundancy

9RPV has chains which belong to the following equivalence classes in the current representative set:

Similar structures

None found
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